Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34561 Brassica carinata HOM05D000361 ORTHO05D093607 1.5e-56 222.6 110 100.0
BcaC08g45127 Brassica carinata HOM05D000267 ORTHO05D017539 1.5e-08 63.2 68 58.8
PGSC0003DMG400013633 Solanum tuberosum HOM05D000361 ORTHO05D008294 1.4e-06 56.6 91 44.0
Aa31LG9G8530 Aethionema arabicum HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
AL8G14990 Arabidopsis lyrata HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
AT5G44635 Arabidopsis thaliana HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
BcaC03g16683 Brassica carinata HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
BcaC06g31601 Brassica carinata HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
BcaC06g34528 Brassica carinata HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
A06p47040 Brassica napus HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
C02p45220 Brassica napus HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
C07p27530 Brassica napus HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
BolC2t10553H Brassica oleracea HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
BolC7t43284H Brassica oleracea HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
BraA06t27577Z Brassica rapa HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
Carub.0008s0363 Capsella rubella HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
CARHR178260 Cardamine hirsuta HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
CBR_g12702 Chara braunii HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
Thhalv10000779m.g Eutrema salsugineum HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
Manes.16G060200 Manihot esculenta HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
Os05g0235800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
SHI08119 Sapria himalayana HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
Sp2g09450 Schrenkiella parvula HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
VMungo1309G2334 Vigna mungo HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
Zm00001eb284360 Zea mays HOM05D000361 ORTHO05D008294 2.4e-06 55.8 87 44.8
Zm00001eb350340 Zea mays HOM05D000361 ORTHO05D008294 3.1e-06 55.5 87 43.7
Medtr2g437540 Medicago truncatula HOM05D000361 ORTHO05D008294 4.0e-06 55.1 87 43.7
ATR0737G139 Amborella trichopoda HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
EL10Ac7g17302 Beta vulgaris HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
CSS0044464 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Cfa001165 Carpinus fangiana HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
CiPaw.09G140700 Carya illinoinensis HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
AUR62040986 Chenopodium quinoa HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Ca_17753_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Cc09_g04600 Coffea canephora HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Haze_05186 Corylus avellana HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
MELO3C006995.2 Cucumis melo HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
CsaV3_6G053180 Cucumis sativus L. HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Eucgr.D00002 Eucalyptus grandis HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Glyma.09G047300 Glycine max HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Glyma.15G154900 Glycine max HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Lj1C1152G4 Lonicera japonica HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Lj6g0011881 Lotus japonicus HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Lalb_Chr18g0051851 Lupinus albus HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
MD05G1242400 Malus domestica HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
MD10G1224200 Malus domestica HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Medtr8g090000 Medicago truncatula HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Nn1g09868 Nelumbo nucifera HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Phvul.009G245600 Phaseolus vulgaris HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
PRCOL_00003449 Prasinoderma coloniale HOM05D000361 ORTHO05D008294 5.3e-06 54.7 90 42.2
PGR044G0817 Punica granatum HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
QL11p010760 Quercus lobata HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Rhsim13G0136200 Rhododendron simsii HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
RcHm_v2.0_Chr7g0214621 Rosa chinensis HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 42.5
Sed0009371 Sechium edule HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
Sc24g0002810 Simmondsia chinensis HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
THA.LOC104811945 Tarenaya hassleriana HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
TPR.G6256 Trifolium pratense HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
TAR627G0013 Trochodendron aralioides HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
vmacro03573 Vaccinium macrocarpon HOM05D000361 ORTHO05D008294 5.3e-06 54.7 87 43.7
BcaC05g28587 Brassica carinata HOM05D000267 ORTHO05D017539 6.9e-06 54.3 57 54.4
C05p46920 Brassica napus HOM05D000267 ORTHO05D017539 6.9e-06 54.3 57 54.4
BolC5t33422H Brassica oleracea HOM05D000267 ORTHO05D017539 6.9e-06 54.3 57 54.4
CANSAT35G1399 Cannabis sativa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
CAN.G809.9 Capsicum annuum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Cpa.g.sc30.68 Carica papaya HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
AUR62042103 Chenopodium quinoa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
COL.COLO4_25023 Corchorus olitorius HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
DCAR_003731 Daucus carota HOM05D000361 ORTHO05D008294 6.9e-06 54.3 84 44.0
Duzib132G1205 Durio zibethinus HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
FvH4_3g13360 Fragaria vesca HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
FAN11G3268 Fragaria x ananassa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
FAN16G0385 Fragaria x ananassa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
FAN21G0569 Fragaria x ananassa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
FAN25G0043 Fragaria x ananassa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
FAN25G0195 Fragaria x ananassa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Gohir.A03G218100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Gohir.D02G240100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Gorai.005G268500 Gossypium raimondii HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Lsat_1_v5_gn_9_100181 Lactuca sativa HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
MBI06_g26561_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Nitab4.5_0001815g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Nitab4.5_0007687g0010 Nicotiana tabacum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
PSO541G2719 Papaver somniferum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
PSO541G6368 Papaver somniferum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
PSO675G8445 Papaver somniferum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Peaxi162Scf00036g00321 Petunia axillaris HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
RcHm_v2.0_Chr5g0022071 Rosa chinensis HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Hund20134 Selenicereus undatus HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Solyc02g082180.3 Solanum lycopersicum HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Sopen02g026840 Solanum pennellii HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
Thecc.02G000800 Theobroma cacao HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
TWI63G1117 Tripterygium wilfordii HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
HPP92_000506 Vanilla planifolia HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
GSVIVG01003253001 Vitis vinifera HOM05D000361 ORTHO05D008294 6.9e-06 54.3 87 42.5
ECA240G0581 Erigeron canadensis HOM05D000361 ORTHO05D008294 9.0e-06 53.9 87 41.4
HanXRQChr07g0187741 Helianthus annuus HOM05D000361 ORTHO05D008294 9.0e-06 53.9 87 41.4
SEGI_18737 Sequoiadendron giganteum HOM05D000361 ORTHO05D008294 9.0e-06 53.9 87 42.5


User provided reference genes

Program Settings