Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 2.1e-113 412.5 234 100.0
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 2.3e-91 339.3 234 81.6
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 2.3e-91 339.3 234 81.6
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 4.3e-90 335.1 234 81.2
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 4.4e-87 325.1 234 80.8
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 7.6e-87 324.3 234 79.9
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 9.6e-82 307.4 235 70.2
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 6.2e-81 304.7 234 75.2
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 3.8e-78 295.4 237 68.4
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 2.4e-77 292.7 235 68.5
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 1.6e-76 290.0 238 67.2
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 2.1e-68 263.1 190 72.1
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 2.1e-28 130.2 219 45.7
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 1.0e-27 127.9 203 40.9
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.5e-21 105.5 153 45.1
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 1.6e-20 104.0 142 47.9
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 6.1e-20 102.1 167 36.5
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 1.2e-18 97.8 142 45.8
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 1.5e-18 97.4 218 33.5
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 2.6e-18 96.7 125 42.4
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 2.6e-18 96.7 124 49.2
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 5.7e-18 95.5 153 43.1
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 9.8e-18 94.7 143 45.5
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 9.8e-18 94.7 168 32.1
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 1.7e-17 94.0 144 45.8
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 1.7e-17 94.0 157 37.6
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 1.7e-17 94.0 147 44.9
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 2.2e-17 93.6 168 31.5
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 2.8e-17 93.2 124 41.9
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 2.8e-17 93.2 159 37.1
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 2.8e-17 93.2 136 47.1
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 3.7e-17 92.8 171 43.9
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 3.7e-17 92.8 141 44.7
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 3.7e-17 92.8 173 41.6
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 1.1e-16 91.3 140 47.1
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 1.8e-16 90.5 161 42.9
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 1.8e-16 90.5 161 42.9
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 1.8e-16 90.5 160 44.4
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 2.4e-16 90.1 163 44.8
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 2.4e-16 90.1 125 44.0
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 3.1e-16 89.7 130 47.7
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 4.1e-16 89.4 188 38.3
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.2e-15 87.8 163 42.3
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.6e-15 87.4 126 47.6
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 3.5e-15 86.3 120 48.3
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 3.5e-15 86.3 141 39.7
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 5.9e-15 85.5 157 36.3
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 1.0e-14 84.7 157 36.3
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 1.3e-14 84.3 161 35.4
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 1.7e-14 84.0 158 32.9
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 2.3e-14 83.6 175 38.3
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 2.9e-14 83.2 120 46.7
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 2.9e-14 83.2 221 34.4
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.9e-14 83.2 136 42.6
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 3.8e-14 82.8 117 47.0
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 6.5e-14 82.0 197 36.5
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 8.6e-14 81.6 152 44.1
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 8.6e-14 81.6 157 43.3
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 1.5e-13 80.9 125 45.6
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.5e-13 80.1 139 40.3
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 3.2e-13 79.7 119 47.1
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 4.2e-13 79.3 158 36.7
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 4.2e-13 79.3 139 40.3
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 9.5e-13 78.2 143 42.0
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 1.2e-12 77.8 138 39.1
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 1.6e-12 77.4 170 40.0
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.6e-12 77.4 123 43.1
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.8e-12 76.6 140 41.4
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 2.8e-12 76.6 140 43.6
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 3.6e-12 76.3 129 45.0
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 3.6e-12 76.3 131 45.0
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 3.6e-12 76.3 126 38.1
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 3.6e-12 76.3 123 38.2
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 4.7e-12 75.9 139 38.1
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 4.7e-12 75.9 164 39.0
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 6.1e-12 75.5 146 41.1
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 6.1e-12 75.5 135 44.4
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 1.4e-11 74.3 99 48.5
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 4.0e-11 72.8 115 46.1
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 4.0e-11 72.8 162 36.4
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 8.8e-11 71.6 139 43.9
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 1.5e-10 70.9 155 40.6
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 2.6e-10 70.1 113 45.1
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 4.4e-10 69.3 126 44.4
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 7.5e-10 68.6 99 44.4
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 7.5e-10 68.6 160 38.1
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 3.7e-09 66.2 199 26.6
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 6.3e-09 65.5 165 35.2
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 4.1e-08 62.8 148 39.2
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 5.4e-08 62.4 143 34.3
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 9.2e-08 61.6 168 35.7
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 9.2e-08 61.6 136 34.6
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 3.5e-07 59.7 121 42.1
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 4.5e-07 59.3 125 43.2
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.0e-06 58.2 127 40.9
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 5.0e-06 55.8 146 30.8
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 6.6e-06 55.5 132 41.7
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 8.6e-06 55.1 132 38.6


User provided reference genes

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