Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34536 Brassica carinata HOM05D010326 ORTHO05D012728 2.3e-69 265.4 131 100.0
BcaC01g01289 Brassica carinata HOM05D010326 ORTHO05D012728 1.3e-59 233.0 166 75.9
BcaC05g28658 Brassica carinata HOM05D010326 ORTHO05D012728 2.8e-46 188.7 160 66.2
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 1.1e-45 186.8 135 73.3
C07p50820 Brassica napus HOM05D010326 ORTHO05D012728 4.0e-45 184.9 135 72.6
Carub.0011s0008 Capsella rubella HOM05D010326 ORTHO05D012728 5.3e-37 157.9 113 67.3
AL2G13740 Arabidopsis lyrata HOM05D010326 ORTHO05D012728 6.4e-35 151.0 99 74.7
Aa31LG3G5580 Aethionema arabicum HOM05D010326 ORTHO05D012728 2.7e-33 145.6 108 64.8
BcaC04g22485 Brassica carinata HOM05D010326 ORTHO05D012728 1.5e-31 139.8 119 65.5
Carub.0008s0764 Capsella rubella HOM05D010326 ORTHO05D033154 5.6e-31 137.9 87 74.7
THA.LOC104818562 Tarenaya hassleriana HOM05D010326 ORTHO05D000285 9.3e-26 120.6 110 50.9
A10p19220 Brassica napus HOM05D010326 ORTHO05D012728 7.4e-23 110.9 127 52.8
BcaC01g01183 Brassica carinata HOM05D010326 ORTHO05D012728 1.6e-17 93.2 128 50.8
BolC5t33502H Brassica oleracea HOM05D010326 ORTHO05D012728 4.6e-17 91.7 59 78.0
AT2G14755 Arabidopsis thaliana HOM05D010326 ORTHO05D012728 3.0e-16 89.0 102 51.0
BolC9t54778H Brassica oleracea HOM05D010326 ORTHO05D012728 1.3e-14 83.6 52 76.9
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-09 66.6 113 27.4
CANSAT78G1001 Cannabis sativa HOM05D000876 ORTHO05D000285 1.0e-08 63.9 103 28.2
Gorai.010G149000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-08 63.2 116 29.3
BraA03t15421Z Brassica rapa HOM05D028599 ORTHO05D027333 2.3e-08 62.8 81 40.7
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 3.9e-08 62.0 113 25.7
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 5.1e-08 61.6 87 31.0
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 6.7e-08 61.2 83 34.9
Gorai.008G062400 Gossypium raimondii HOM05D000876 ORTHO05D000285 6.7e-08 61.2 118 28.8
Gorai.004G157500 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.7e-08 60.8 118 28.8
Gorai.011G123600 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.7e-08 60.8 118 28.8
Gorai.006G056900 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.1e-07 60.5 122 28.7
Gorai.009G342300 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.1e-07 60.5 123 28.5
Gorai.013G184300 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.1e-07 60.5 102 31.4
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 1.5e-07 60.1 89 33.7
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 1.5e-07 60.1 89 33.7
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 1.5e-07 60.1 108 26.9
Gorai.011G122600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-07 60.1 116 28.4
CiPaw.04G143900 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.9e-07 59.7 104 29.8
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 2.5e-07 59.3 126 27.8
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.5e-07 59.3 116 28.4
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 3.3e-07 58.9 108 31.5
Gorai.004G102900 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.3e-07 58.9 120 28.3
Gorai.N004200 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.3e-07 58.9 118 28.8
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.3e-07 58.5 111 28.8
HanXRQChr09g0265901 Helianthus annuus HOM05D000876 ORTHO05D000285 4.3e-07 58.5 71 32.4
Gorai.012G128500 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.7e-07 58.2 109 27.5
C03p79750 Brassica napus HOM05D010326 ORTHO05D012728 7.4e-07 57.8 42 69.0
Gorai.013G171200 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.4e-07 57.8 116 27.6
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 9.7e-07 57.4 116 25.9
CANSAT35G0018 Cannabis sativa HOM05D000876 ORTHO05D000285 9.7e-07 57.4 108 25.9
Gorai.005G210400 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.7e-07 57.4 116 28.4
HanXRQChr09g0245471 Helianthus annuus HOM05D000876 ORTHO05D000285 9.7e-07 57.4 71 31.0
TPR.G33899 Trifolium pratense HOM05D000876 ORTHO05D000285 9.7e-07 57.4 107 28.0
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.3e-06 57.0 87 32.2
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.3e-06 57.0 90 30.0
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.3e-06 57.0 90 30.0
Gorai.004G036600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.3e-06 57.0 114 28.1
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.3e-06 57.0 88 30.7
Atru.chr11.924 Acer truncatum HOM05D000034 ORTHO05D000285 1.6e-06 56.6 104 27.9
Atru.chr4.1880 Acer truncatum HOM05D000876 ORTHO05D000285 1.6e-06 56.6 87 31.0
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-06 56.6 123 24.4
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-06 56.6 123 24.4
HanXRQChr02g0051761 Helianthus annuus HOM05D009081 ORTHO05D000285 1.6e-06 56.6 71 31.0
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 2.2e-06 56.2 116 25.9
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 2.2e-06 56.2 117 27.4
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.2e-06 56.2 104 28.8
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 2.2e-06 56.2 111 27.9
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.2e-06 56.2 111 27.9
Gorai.012G085300 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.2e-06 56.2 88 29.5
Gorai.N003000 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.2e-06 56.2 86 30.2
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 2.2e-06 56.2 115 28.7
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 2.2e-06 56.2 87 29.9
C05p47880 Brassica napus HOM05D010326 ORTHO05D012728 2.8e-06 55.8 42 66.7
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 2.8e-06 55.8 110 25.5
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.8e-06 55.8 83 31.3
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 2.8e-06 55.8 111 27.9
FvH4_7g12221 Fragaria vesca HOM05D000876 ORTHO05D000285 2.8e-06 55.8 110 28.2
Gorai.006G093000 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.8e-06 55.8 88 29.5
Gorai.009G359600 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.8e-06 55.8 119 26.9
Gorai.013G161600 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.8e-06 55.8 116 28.4
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 3.7e-06 55.5 123 24.4
Gorai.003G031500 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.7e-06 55.5 100 27.0
Gorai.010G124300 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.7e-06 55.5 105 29.5
Medtr1g073440 Medicago truncatula HOM05D009922 ORTHO05D000285 3.7e-06 55.5 93 29.0
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 4.8e-06 55.1 110 25.5
Gohir.D08G116700 Gossypium hirsutum HOM05D000876 ORTHO05D000285 4.8e-06 55.1 85 29.4
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 4.8e-06 55.1 102 27.5
CANSAT56G0752 Cannabis sativa HOM05D000876 ORTHO05D000285 6.3e-06 54.7 103 27.2
Oeu044768.1 Olea europaea HOM05D000876 ORTHO05D000285 6.3e-06 54.7 51 39.2
FAN05G1224 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.2e-06 54.3 111 27.0
Gorai.004G036300 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.2e-06 54.3 115 28.7
Gorai.008G032400 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.2e-06 54.3 115 28.7
Gorai.008G247700 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.2e-06 54.3 85 29.4


User provided reference genes

Program Settings