Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 6.1e-96 354.4 209 100.0
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.7e-77 293.1 209 72.7
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 2.8e-77 292.4 209 72.7
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.7e-74 283.1 210 85.2
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.7e-74 283.1 210 85.2
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.7e-74 283.1 210 85.2
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 5.4e-68 261.5 220 72.7
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.3e-42 177.2 219 52.5
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.0e-39 165.6 223 46.6
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 5.8e-38 161.8 215 51.2
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 1.7e-37 160.2 223 48.0
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.4e-36 156.4 221 46.2
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.1e-36 154.8 210 49.5
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.3e-34 150.6 234 44.0
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 2.3e-34 149.8 224 45.5
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.0e-34 149.4 229 46.3
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.9e-33 146.7 235 43.0
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 5.6e-33 145.2 219 47.0
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.8e-32 142.9 219 42.9
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.6e-24 117.1 242 36.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 8.1e-24 114.8 229 43.7
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 9.0e-23 111.3 239 37.2
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 2.2e-21 106.7 221 37.6
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 2.5e-20 103.2 233 38.2
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.2e-20 102.4 202 38.6
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 9.3e-20 101.3 202 38.1
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 9.3e-20 101.3 202 38.1
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 9.3e-20 101.3 238 36.1
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 4.6e-19 99.0 256 31.6
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 6.0e-19 98.6 221 35.7
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 3.0e-18 96.3 243 32.9
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.0e-18 96.3 239 34.7
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 3.0e-18 96.3 255 33.3
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 5.1e-18 95.5 256 32.0
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 5.1e-18 95.5 214 37.4
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 6.7e-18 95.1 246 31.3
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 6.7e-18 95.1 210 37.1
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.7e-18 95.1 239 34.3
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 8.7e-18 94.7 239 33.9
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 8.7e-18 94.7 248 37.5
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.5e-17 94.0 215 34.9
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.5e-17 93.2 240 31.7
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.5e-17 93.2 249 33.3
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 3.3e-17 92.8 243 31.3
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.3e-17 92.8 237 34.2
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 4.3e-17 92.4 248 31.9
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 4.3e-17 92.4 230 33.0
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 5.7e-17 92.0 236 34.3
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.7e-17 92.0 254 33.1
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 5.7e-17 92.0 214 34.6
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.3e-16 90.9 239 33.9
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.3e-16 90.9 269 33.5
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 1.6e-16 90.5 276 31.2
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 2.8e-16 89.7 256 31.6
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.8e-16 89.7 264 34.1
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.7e-16 89.4 227 34.4
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 6.2e-16 88.6 238 36.1
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 6.2e-16 88.6 274 33.6
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 1.8e-15 87.0 246 31.7
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.1e-15 86.3 229 31.4
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.0e-15 85.9 240 32.9
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 5.3e-15 85.5 244 33.6
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 5.3e-15 85.5 249 30.5
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 6.9e-15 85.1 244 31.6
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 9.0e-15 84.7 249 35.3
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.2e-14 84.3 215 35.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 2.6e-14 83.2 239 30.1
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.6e-14 83.2 243 32.1
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.4e-14 82.8 247 30.8
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 4.5e-14 82.4 250 30.4
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 7.6e-14 81.6 244 32.0
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 7.6e-14 81.6 253 31.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.0e-13 81.3 218 34.4
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.0e-13 81.3 243 31.7
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.0e-13 81.3 251 30.7
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.3e-13 80.9 228 31.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.7e-13 80.5 238 29.0
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.7e-13 80.5 243 30.5
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 2.9e-13 79.7 214 33.6
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 2.9e-13 79.7 242 29.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 3.8e-13 79.3 245 31.0
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 3.8e-13 79.3 209 37.3
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 6.5e-13 78.6 208 31.7
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 6.5e-13 78.6 267 29.2
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 8.4e-13 78.2 251 30.3
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.1e-12 77.8 236 32.2
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.1e-12 77.8 245 30.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.4e-12 77.4 206 32.5
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.4e-12 77.4 235 29.4
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 1.9e-12 77.0 240 32.1
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 5.5e-12 75.5 257 29.6
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 7.1e-12 75.1 260 30.8
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.6e-11 73.9 250 36.4
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.6e-11 73.9 236 28.8
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 2.7e-11 73.2 220 30.0
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.7e-11 73.2 208 34.1
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 4.6e-11 72.4 239 31.8
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 6.1e-11 72.0 236 28.8
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 6.1e-11 72.0 251 28.7
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 7.9e-11 71.6 246 27.6
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 3.0e-10 69.7 193 31.1
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 5.1e-10 68.9 228 26.8
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 8.7e-10 68.2 239 29.3
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.1e-09 67.8 240 27.5
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.1e-09 67.8 224 28.1
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 5.7e-09 65.5 224 26.8
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.4e-09 65.1 245 29.0
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.3e-08 64.3 249 35.7
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.6e-08 63.9 196 31.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.4e-07 60.8 245 28.6
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.8e-07 60.5 248 27.8
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 2.4e-07 60.1 236 28.4
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 4.1e-07 59.3 244 27.5
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 6.9e-07 58.5 229 29.7
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 6.9e-07 58.5 219 28.8
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 3.4e-06 56.2 131 32.8
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 3.4e-06 56.2 226 28.3
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 4.5e-06 55.8 38 63.2
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 7.7e-06 55.1 226 27.9
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.0e-05 54.7 42 69.0


User provided reference genes

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