Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 7.6e-65 250.4 128 100.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 6.7e-61 237.3 130 95.4
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.1e-60 236.5 132 95.5
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.1e-60 236.5 132 95.5
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 5.6e-60 234.2 131 91.6
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 3.7e-59 231.5 130 93.1
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 3.7e-59 231.5 130 93.1
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 3.7e-59 231.5 130 93.1
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 4.8e-59 231.1 130 93.1
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 6.2e-59 230.7 131 93.9
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 6.2e-59 230.7 131 93.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.0e-58 226.9 131 89.3
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 5.5e-55 217.6 134 85.1
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.1e-55 217.2 134 85.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.8e-51 205.3 134 82.8
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.1e-47 193.4 133 81.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.9e-47 192.6 132 75.8
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.2e-47 191.8 133 76.7
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 7.1e-47 190.7 128 78.9
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.2e-46 189.9 128 72.7
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.7e-46 188.7 122 77.9
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 6.1e-46 187.6 128 79.7
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.0e-45 186.8 129 78.3
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 2.3e-45 185.7 134 79.1
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.3e-45 185.7 129 77.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 3.0e-45 185.3 126 76.2
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 3.0e-45 185.3 128 75.0
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 74.2
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 74.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 78.9
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 75.8
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 75.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 5.1e-45 184.5 130 73.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 6.7e-45 184.1 119 78.2
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 8.7e-45 183.7 133 75.2
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 8.7e-45 183.7 129 76.0
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 8.7e-45 183.7 128 78.1
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.1e-44 183.3 131 74.8
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-44 183.3 131 74.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.1e-44 183.3 126 75.4
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.1e-44 183.3 128 76.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.1e-44 183.3 128 76.6
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 5.7e-44 181.0 129 72.9
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.3e-43 179.9 128 75.8
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.3e-43 179.9 128 75.8
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.6e-43 179.5 126 75.4
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.6e-43 179.5 129 72.1
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 2.2e-43 179.1 131 71.8
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.8e-43 178.7 117 76.1
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.8e-43 178.7 117 78.6
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.8e-43 178.7 126 75.4
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.8e-43 178.7 126 73.0
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 3.7e-43 178.3 129 73.6
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.7e-43 178.3 121 77.7
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.8e-43 177.9 129 72.1
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 8.2e-43 177.2 129 71.3
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.1e-42 176.8 132 71.2
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.4e-42 176.4 128 70.3
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 3.1e-42 175.3 128 72.7
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 4.1e-42 174.9 127 70.9
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.3e-42 174.5 117 75.2
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 71.9
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 6.9e-42 174.1 120 73.3
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.5e-41 172.9 129 72.1
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 1.5e-41 172.9 128 68.8
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.5e-41 172.9 120 74.2
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.5e-41 172.9 125 72.8
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.5e-41 172.9 119 73.9
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 69.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 70.3
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.4e-41 171.8 128 70.3
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 4.5e-41 171.4 128 70.3
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 5.9e-41 171.0 131 71.0
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 7.7e-41 170.6 128 68.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.0e-40 170.2 128 71.9
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 71.0
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 128 70.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.3e-40 169.9 128 69.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.7e-40 169.5 117 73.5
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 2.2e-40 169.1 128 67.2
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.2e-40 169.1 126 72.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.2e-40 169.1 126 69.8
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.9e-40 168.7 128 71.1
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.9e-40 168.7 128 71.9
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.8e-40 168.3 128 66.4
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.5e-40 167.5 117 74.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.5e-40 167.5 128 69.5
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 6.5e-40 167.5 128 74.2
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 6.5e-40 167.5 129 70.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 8.5e-40 167.2 128 64.8
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 8.5e-40 167.2 129 72.9
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.1e-39 166.8 127 70.9
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 1.1e-39 166.8 125 70.4
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.1e-39 166.8 134 68.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.2e-39 164.9 128 69.5
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-38 162.9 128 68.8
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 2.1e-38 162.5 130 66.2
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.1e-38 162.5 129 71.3
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.1e-38 162.5 128 64.8
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.7e-38 162.2 123 74.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.6e-38 161.8 126 72.2
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.6e-38 161.8 104 82.7
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.1e-38 161.0 128 69.5
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.1e-38 161.0 128 68.0
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.1e-38 161.0 128 69.5
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.9e-38 160.6 128 69.5
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.9e-38 160.6 128 69.5
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 7.9e-38 160.6 133 69.2
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.4e-37 159.8 128 68.0
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.8e-37 159.5 128 66.4
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 3.9e-37 158.3 128 69.5
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 8.8e-37 157.1 99 80.8
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.1e-36 156.8 127 65.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.1e-36 156.8 127 65.4
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.5e-36 156.4 118 69.5
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.0e-36 156.0 111 74.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.0e-36 156.0 133 69.9
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 9.7e-36 153.7 115 73.0
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.3e-35 153.3 111 73.0
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.7e-35 152.9 134 64.9
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.7e-35 152.9 111 73.0
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.2e-35 152.5 83 86.7
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.8e-35 152.1 128 66.4
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.8e-35 152.1 116 68.1
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 3.7e-35 151.8 111 72.1
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 6.3e-35 151.0 115 69.6
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.4e-34 149.8 123 68.3
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.8e-34 149.4 83 89.2
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.5e-33 146.4 85 85.9
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-31 139.8 129 65.9
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 4.2e-31 138.3 83 81.9
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.6e-30 135.2 120 65.8
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.4e-29 133.3 84 78.6
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.1e-29 131.3 109 64.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 7.4e-28 127.5 125 58.4
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 9.7e-28 127.1 113 61.9
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 1.2e-25 120.2 117 55.6
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-25 119.8 78 76.9
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.5e-25 118.6 69 87.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.8e-24 115.2 124 57.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.1e-23 113.6 93 60.2
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 3.6e-22 108.6 129 55.8
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.0e-22 107.5 93 60.2
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.0e-21 107.1 122 52.5
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.4e-21 106.7 128 51.6
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.8e-21 104.0 69 75.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.4e-20 101.7 93 58.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 8.2e-19 97.4 95 57.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 7.0e-18 94.4 106 53.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 9.1e-18 94.0 92 57.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.5e-17 91.7 46 100.0
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.2e-16 89.4 71 63.4
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.2e-15 85.5 65 63.1
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 5.5e-15 84.7 67 59.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 6.1e-06 54.7 33 75.8


User provided reference genes

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