Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 3.1e-28 128.3 90 100.0
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.9e-17 92.4 55 89.1
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 6.0e-16 87.4 89 60.7
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 7.8e-16 87.0 55 83.6
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.9e-15 84.7 52 84.6
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.5e-14 82.8 53 81.1
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.6e-13 79.3 47 89.4
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.6e-13 79.3 46 91.3
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.6e-13 79.3 47 89.4
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.1e-12 76.6 89 71.9
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.4e-12 75.5 54 74.1
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 9.0e-12 73.6 46 82.6
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 2.6e-11 72.0 45 82.2
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.6e-11 72.0 45 84.4
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 3.4e-11 71.6 46 80.4
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 7.6e-11 70.5 52 75.0
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.1e-08 62.4 42 78.6
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.6e-08 61.2 54 61.1
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 4.6e-08 61.2 54 61.1
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 7.8e-08 60.5 51 64.7
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 7.8e-08 60.5 52 61.5
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 1.3e-07 59.7 53 60.4
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.3e-07 59.7 54 59.3
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.3e-07 59.7 52 61.5
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.7e-07 59.3 53 62.3
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.7e-07 59.3 53 64.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.7e-07 59.3 52 65.4
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.3e-07 58.9 53 60.4
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.0e-07 58.5 56 62.5
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 3.9e-07 58.2 52 63.5
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.1e-07 57.8 53 60.4
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.6e-07 57.4 56 58.9
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 6.6e-07 57.4 55 58.2
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 6.6e-07 57.4 50 64.0
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 8.7e-07 57.0 54 59.3
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 8.7e-07 57.0 53 60.4
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 8.7e-07 57.0 50 62.0
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 8.7e-07 57.0 51 62.7
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.5e-06 56.2 51 64.7
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.9e-06 55.8 56 57.1
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 2.5e-06 55.5 56 55.4
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 2.5e-06 55.5 56 55.4
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 2.5e-06 55.5 56 58.9
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.5e-06 55.5 54 55.6
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.5e-06 55.5 58 58.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 2.5e-06 55.5 50 62.0
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 2.5e-06 55.5 55 56.4
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 3.3e-06 55.1 52 63.5
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.3e-06 55.1 53 58.5
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 3.3e-06 55.1 54 55.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 5.6e-06 54.3 48 60.4
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 5.6e-06 54.3 48 62.5
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 7.3e-06 53.9 51 58.8
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 9.6e-06 53.5 53 60.4


User provided reference genes

Program Settings