Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34412 Brassica carinata HOM05D000619 ORTHO05D012567 2.1e-35 151.8 73 100.0
BcaB08g34409 Brassica carinata HOM05D000619 ORTHO05D007729 9.4e-28 126.3 63 93.7
BcaC07g41539 Brassica carinata HOM05D000619 ORTHO05D007729 1.2e-27 125.9 62 95.2
C08p45420 Brassica napus HOM05D000619 ORTHO05D007729 1.2e-27 125.9 62 95.2
BolC8t52096H Brassica oleracea HOM05D000619 ORTHO05D007729 1.2e-27 125.9 62 95.2
A09p61800 Brassica napus HOM05D000619 ORTHO05D007729 4.7e-27 124.0 63 92.1
BraA09t41548Z Brassica rapa HOM05D000619 ORTHO05D007729 4.7e-27 124.0 63 92.1
Aa31LG1G310 Aethionema arabicum HOM05D000619 ORTHO05D007729 5.2e-26 120.6 63 88.9
Sp1g13220 Schrenkiella parvula HOM05D000619 ORTHO05D007729 2.0e-25 118.6 63 88.9
CARHR015320 Cardamine hirsuta HOM05D000619 ORTHO05D007729 1.8e-23 112.1 63 84.1
AL1G26810 Arabidopsis lyrata HOM05D000619 ORTHO05D007729 4.1e-23 110.9 63 84.1
AT1G14780 Arabidopsis thaliana HOM05D000619 ORTHO05D007729 4.1e-23 110.9 63 84.1
Carub.0001s1458 Capsella rubella HOM05D000619 ORTHO05D007729 4.1e-23 110.9 63 84.1
Thhalv10007298m.g Eutrema salsugineum HOM05D000619 ORTHO05D007729 5.4e-23 110.5 60 86.7
BolC5t30017H Brassica oleracea HOM05D000619 ORTHO05D007729 2.0e-22 108.6 58 87.9
BcaB02g06548 Brassica carinata HOM05D000619 ORTHO05D007729 3.5e-22 107.8 56 89.3
BcaC05g25397 Brassica carinata HOM05D000619 ORTHO05D007729 5.9e-22 107.1 56 89.3
C05p12730 Brassica napus HOM05D000619 ORTHO05D007729 5.9e-22 107.1 56 89.3
A06p10840 Brassica napus HOM05D000619 ORTHO05D007729 2.9e-21 104.8 56 87.5
BraA06t24262Z Brassica rapa HOM05D000619 ORTHO05D007729 2.9e-21 104.8 56 87.5
Ah.03g135890 Amaranthus hybridus HOM05D000619 ORTHO05D007729 7.8e-14 80.1 58 58.6
Manes.17G085300 Manihot esculenta HOM05D000619 ORTHO05D007729 7.8e-14 80.1 58 63.8
Dinv06128 Davidia involucrata HOM05D000619 ORTHO05D007729 3.9e-13 77.8 52 67.3
Lj3C863G4 Lonicera japonica HOM05D000619 ORTHO05D007729 3.9e-13 77.8 50 66.0
Gohir.D02G136300 Gossypium hirsutum HOM05D000619 ORTHO05D007729 5.0e-13 77.4 58 67.2
Gorai.005G152300 Gossypium raimondii HOM05D000619 ORTHO05D007729 5.0e-13 77.4 58 67.2
Manes.15G136000 Manihot esculenta HOM05D000619 ORTHO05D007729 5.0e-13 77.4 63 55.6
TWI74G0413 Tripterygium wilfordii HOM05D000619 ORTHO05D007729 5.0e-13 77.4 62 61.3
CDE11G1094 Ceratophyllum demersum HOM05D000619 ORTHO05D007729 6.6e-13 77.0 62 58.1
Haze_10856 Corylus avellana HOM05D000619 ORTHO05D007729 6.6e-13 77.0 52 63.5
Gohir.A13G027400 Gossypium hirsutum HOM05D000619 ORTHO05D007729 6.6e-13 77.0 47 74.5
Gohir.D13G026200 Gossypium hirsutum HOM05D000619 ORTHO05D007729 6.6e-13 77.0 47 74.5
Gorai.013G029400 Gossypium raimondii HOM05D000619 ORTHO05D007729 6.6e-13 77.0 47 74.5
Sabra10G0077200 Salix brachista HOM05D000619 ORTHO05D007729 8.6e-13 76.6 63 58.7
Aqoxy3G04077 Aquilegia oxysepala HOM05D000619 ORTHO05D007729 1.1e-12 76.3 57 64.9
Cpa.g.sc2.172 Carica papaya HOM05D000619 ORTHO05D007729 1.1e-12 76.3 62 59.7
Gohir.A03G111700 Gossypium hirsutum HOM05D000619 ORTHO05D007729 1.1e-12 76.3 55 69.1
Potri.008G136401 Populus trichocarpa HOM05D000619 ORTHO05D007729 1.1e-12 76.3 47 72.3
unitig_27.g25307 Utricularia gibba HOM05D000619 ORTHO05D007729 1.1e-12 76.3 54 66.7
vmacro08574 Vaccinium macrocarpon HOM05D000619 ORTHO05D007729 1.1e-12 76.3 53 62.3
EL10Ac6g13547 Beta vulgaris HOM05D000619 ORTHO05D007729 1.9e-12 75.5 49 67.3
Ciclev10014601m.g Citrus clementina HOM05D000619 ORTHO05D007729 1.9e-12 75.5 63 55.6
GSVIVG01011635001 Vitis vinifera HOM05D000619 ORTHO05D007729 1.9e-12 75.5 64 54.7
Oeu013817.1 Olea europaea HOM05D000619 ORTHO05D007729 2.5e-12 75.1 53 62.3
Potri.010G104600 Populus trichocarpa HOM05D000619 ORTHO05D007729 2.5e-12 75.1 62 56.5
SGA_v2.0_scaffold23G10177 Striga asiatica HOM05D000619 ORTHO05D007729 3.3e-12 74.7 62 51.6
AUR62005662 Chenopodium quinoa HOM05D000619 ORTHO05D007729 4.3e-12 74.3 50 66.0
AUR62028891 Chenopodium quinoa HOM05D000619 ORTHO05D007729 4.3e-12 74.3 50 66.0
Cfa015043 Carpinus fangiana HOM05D000619 ORTHO05D007729 5.6e-12 73.9 52 61.5
Migut.E00493 Erythranthe guttata HOM05D000619 ORTHO05D007729 5.6e-12 73.9 56 62.5
Thecc.02G308800 Theobroma cacao HOM05D000619 ORTHO05D007729 5.6e-12 73.9 47 72.3
TAR629G2323 Trochodendron aralioides HOM05D000619 ORTHO05D007729 5.6e-12 73.9 50 68.0
Cc11_g06700 Coffea canephora HOM05D000619 ORTHO05D007729 7.3e-12 73.6 53 64.2
Duzib268G0705 Durio zibethinus HOM05D000619 ORTHO05D007729 7.3e-12 73.6 47 70.2
QL03p037162 Quercus lobata HOM05D000619 ORTHO05D007729 7.3e-12 73.6 50 66.0
QL03p037519 Quercus lobata HOM05D000619 ORTHO05D007729 7.3e-12 73.6 50 66.0
RcHm_v2.0_Chr4g0442651 Rosa chinensis HOM05D000619 ORTHO05D007729 9.5e-12 73.2 50 66.0
FAN17G1689 Fragaria x ananassa HOM05D000619 ORTHO05D007729 1.2e-11 72.8 59 55.9
Dinv26360 Davidia involucrata HOM05D000619 ORTHO05D007729 1.6e-11 72.4 50 66.0
ECA233G1592 Erigeron canadensis HOM05D000619 ORTHO05D007729 1.6e-11 72.4 53 56.6
Nn3g18404 Nelumbo nucifera HOM05D000619 ORTHO05D007729 1.6e-11 72.4 58 60.3
Hund25485 Selenicereus undatus HOM05D000619 ORTHO05D007729 1.6e-11 72.4 63 50.8
CiPaw.05G185200 Carya illinoinensis HOM05D000619 ORTHO05D007729 2.1e-11 72.0 51 64.7
Os06g0251100 Oryza sativa ssp. japonica HOM05D000619 ORTHO05D007729 2.8e-11 71.6 59 54.2
arahy.Tifrunner.gnm1.ann1.NE9ZZ9 Arachis hypogaea HOM05D000619 ORTHO05D007729 3.6e-11 71.2 47 66.0
Hma1.2p1_2041F.1_g312200 Hydrangea macrophylla HOM05D000619 ORTHO05D007729 3.6e-11 71.2 50 64.0
MD13G1019100 Malus domestica HOM05D000619 ORTHO05D007729 3.6e-11 71.2 61 54.1
Sabra08G0104200 Salix brachista HOM05D000619 ORTHO05D007729 3.6e-11 71.2 62 58.1
Sed0016627 Sechium edule HOM05D000619 ORTHO05D007729 3.6e-11 71.2 60 55.0
Atru.chr11.878 Acer truncatum HOM05D000619 ORTHO05D007729 4.7e-11 70.9 50 66.0
COL.COLO4_27628 Corchorus olitorius HOM05D000619 ORTHO05D007729 4.7e-11 70.9 55 61.8
MBI19_g09390_MAGBIO Magnolia biondii HOM05D000619 ORTHO05D007729 4.7e-11 70.9 53 64.2
SalBow2G0975 Salvia bowleyana HOM05D000619 ORTHO05D007729 4.7e-11 70.9 56 51.8
CANSAT78G0619 Cannabis sativa HOM05D000619 ORTHO05D007729 6.1e-11 70.5 60 55.0
CDE05G0070 Ceratophyllum demersum HOM05D000619 ORTHO05D007729 6.1e-11 70.5 62 53.2
MELO3C005258.2 Cucumis melo HOM05D000619 ORTHO05D007729 6.1e-11 70.5 60 53.3
CsaV3_5G027960 Cucumis sativus L. HOM05D000619 ORTHO05D007729 6.1e-11 70.5 60 53.3
Lsat_1_v5_gn_8_35241 Lactuca sativa HOM05D000619 ORTHO05D007729 8.0e-11 70.1 60 46.7
Os02g0736300 Oryza sativa ssp. japonica HOM05D000619 ORTHO05D007729 1.4e-10 69.3 47 68.1
Prupe.1G334800 Prunus persica HOM05D000619 ORTHO05D007729 1.4e-10 69.3 61 52.5
CAN.G282.117 Capsicum annuum HOM05D000619 ORTHO05D007729 1.8e-10 68.9 63 50.8
FvH4_4g33390 Fragaria vesca HOM05D000619 ORTHO05D007729 1.8e-10 68.9 63 50.8
FAN07G1267 Fragaria x ananassa HOM05D000619 ORTHO05D007729 1.8e-10 68.9 63 50.8
FAN12G2541 Fragaria x ananassa HOM05D000619 ORTHO05D007729 1.8e-10 68.9 63 50.8
HanXRQChr08g0224251 Helianthus annuus HOM05D000619 ORTHO05D007729 1.8e-10 68.9 61 47.5
Solyc01g005220.3 Solanum lycopersicum HOM05D000619 ORTHO05D007729 1.8e-10 68.9 47 63.8
Sopen01g001250 Solanum pennellii HOM05D000619 ORTHO05D007729 1.8e-10 68.9 47 63.8
PGSC0003DMG400022779 Solanum tuberosum HOM05D000619 ORTHO05D007729 1.8e-10 68.9 47 63.8
arahy.Tifrunner.gnm1.ann1.0U64IK Arachis hypogaea HOM05D000619 ORTHO05D007729 2.3e-10 68.6 47 63.8
Nitab4.5_0001406g0020 Nicotiana tabacum HOM05D000619 ORTHO05D007729 2.3e-10 68.6 53 58.5
DCAR_002674 Daucus carota HOM05D000619 ORTHO05D007729 3.1e-10 68.2 47 63.8
PGR142G3439 Punica granatum HOM05D000619 ORTHO05D007729 3.1e-10 68.2 50 60.0
Actinidia27208 Actinidia chinensis HOM05D000619 ORTHO05D007729 4.0e-10 67.8 67 53.7
Lalb_Chr16g0387471 Lupinus albus HOM05D000619 ORTHO05D007729 4.0e-10 67.8 47 59.6
Nn4g24444 Nelumbo nucifera HOM05D000619 ORTHO05D007729 4.0e-10 67.8 63 49.2
Zm00001eb371490 Zea mays HOM05D000619 ORTHO05D007729 5.2e-10 67.4 62 48.4
Ca_17269_v3 Cicer arietinum L. HOM05D000619 ORTHO05D007729 6.8e-10 67.0 47 57.4
DCAR_030284 Daucus carota HOM05D000619 ORTHO05D007729 6.8e-10 67.0 59 55.9
FAN22G1766 Fragaria x ananassa HOM05D000619 ORTHO05D007729 8.9e-10 66.6 63 49.2
Nitab4.5_0000538g0030 Nicotiana tabacum HOM05D000619 ORTHO05D007729 8.9e-10 66.6 53 56.6
Psat7g007160 Pisum sativum HOM05D000619 ORTHO05D007729 8.9e-10 66.6 47 57.4
Sc04g0010360 Simmondsia chinensis HOM05D000619 ORTHO05D007729 8.9e-10 66.6 63 44.4
Lalb_Chr05g0222111 Lupinus albus HOM05D000619 ORTHO05D007729 1.2e-09 66.2 47 57.4
HPP92_020300 Vanilla planifolia HOM05D000619 ORTHO05D007729 2.0e-09 65.5 50 66.0
ATR0118G031 Amborella trichopoda HOM05D000619 ORTHO05D007729 2.6e-09 65.1 50 56.0
Phvul.002G322500 Phaseolus vulgaris HOM05D000619 ORTHO05D007729 3.4e-09 64.7 47 59.6
VMungo0251G1088 Vigna mungo HOM05D000619 ORTHO05D007729 5.8e-09 63.9 47 57.4
Lj4g0017564 Lotus japonicus HOM05D000619 ORTHO05D007729 9.8e-09 63.2 47 57.4
Zm00001eb253880 Zea mays HOM05D000619 ORTHO05D007729 9.8e-09 63.2 47 63.8
SEGI_00635 Sequoiadendron giganteum HOM05D000619 ORTHO05D008420 1.3e-08 62.8 57 50.9
Glyma.05G240200 Glycine max HOM05D000619 ORTHO05D007729 2.2e-08 62.0 47 55.3
Medtr8g105700 Medicago truncatula HOM05D000619 ORTHO05D007729 2.2e-08 62.0 47 53.2
SEGI_41429 Sequoiadendron giganteum HOM05D000619 ORTHO05D008420 2.9e-08 61.6 56 51.8
Glyma.08G047300 Glycine max HOM05D000619 ORTHO05D007729 8.3e-08 60.1 47 51.1
Aqoxy4G02388 Aquilegia oxysepala HOM05D000619 ORTHO05D002839 4.1e-07 57.8 56 48.2
Phvul.001G263800 Phaseolus vulgaris HOM05D000619 ORTHO05D008420 4.1e-07 57.8 68 45.6
arahy.Tifrunner.gnm1.ann1.A47W8V Arachis hypogaea HOM05D000619 ORTHO05D012567 5.4e-07 57.4 50 54.0
Hund19032 Selenicereus undatus HOM05D000619 ORTHO05D008420 7.0e-07 57.0 44 61.4
FAN09G1916 Fragaria x ananassa HOM05D000619 ORTHO05D002839 1.6e-06 55.8 46 50.0
Nitab4.5_0000381g0070 Nicotiana tabacum HOM05D000619 ORTHO05D002839 1.6e-06 55.8 57 45.6
TAR362G0790 Trochodendron aralioides HOM05D000619 ORTHO05D008420 1.6e-06 55.8 50 54.0
Sabra04G0152400 Salix brachista HOM05D000619 ORTHO05D002839 2.0e-06 55.5 50 50.0
EL10Ac3g07411 Beta vulgaris HOM05D000619 ORTHO05D008420 2.7e-06 55.1 44 56.8
FAN02G0402 Fragaria x ananassa HOM05D000619 ORTHO05D002839 2.7e-06 55.1 46 50.0
FAN14G1830 Fragaria x ananassa HOM05D000619 ORTHO05D002839 2.7e-06 55.1 46 50.0
arahy.Tifrunner.gnm1.ann1.H5PMU0 Arachis hypogaea HOM05D000619 ORTHO05D008420 3.5e-06 54.7 50 52.0
arahy.Tifrunner.gnm1.ann1.P4S7LA Arachis hypogaea HOM05D000619 ORTHO05D008420 3.5e-06 54.7 50 52.0
Gohir.A02G015800 Gossypium hirsutum HOM05D000619 ORTHO05D008420 3.5e-06 54.7 50 50.0
Gohir.A08G081224 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.A12G162350 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.D04G092300 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.D04G110900 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.D04G133401 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.D05G314250 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.D06G176708 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.D07G122300 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gohir.D10G171001 Gossypium hirsutum HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gorai.005G021100 Gossypium raimondii HOM05D000619 ORTHO05D008420 3.5e-06 54.7 50 50.0
Gorai.009G172300 Gossypium raimondii HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Gorai.009G394300 Gossypium raimondii HOM05D000619 ORTHO05D012567 3.5e-06 54.7 50 50.0
Nitab4.5_0008402g0010 Nicotiana tabacum HOM05D000619 ORTHO05D002839 3.5e-06 54.7 57 43.9
Potri.016G135100 Populus trichocarpa HOM05D000619 ORTHO05D002839 3.5e-06 54.7 46 50.0
PGR142G2412 Punica granatum HOM05D000619 ORTHO05D008420 3.5e-06 54.7 62 45.2
arahy.Tifrunner.gnm1.ann1.MNLV84 Arachis hypogaea HOM05D000619 ORTHO05D012567 4.6e-06 54.3 50 50.0
Glyma.05G149200 Glycine max HOM05D000619 ORTHO05D008420 4.6e-06 54.3 50 54.0
Gohir.D02G017200 Gossypium hirsutum HOM05D000619 ORTHO05D008420 4.6e-06 54.3 44 52.3
Lalb_Chr13g0294591 Lupinus albus HOM05D000619 ORTHO05D008420 4.6e-06 54.3 50 54.0
Phvul.L003746 Phaseolus vulgaris HOM05D000619 ORTHO05D008420 4.6e-06 54.3 50 54.0
Psat5g098640 Pisum sativum HOM05D000619 ORTHO05D008420 6.0e-06 53.9 44 56.8
RcHm_v2.0_Chr4g0411351 Rosa chinensis HOM05D000619 ORTHO05D008420 6.0e-06 53.9 44 59.1
VMungo0251G1970 Vigna mungo HOM05D000619 ORTHO05D008420 6.0e-06 53.9 50 54.0
Atru.chr3.1826 Acer truncatum HOM05D000619 ORTHO05D008420 7.8e-06 53.5 50 52.0
CANSAT78G1277 Cannabis sativa HOM05D000619 ORTHO05D008420 7.8e-06 53.5 44 59.1
AUR62018506 Chenopodium quinoa HOM05D000619 ORTHO05D008420 7.8e-06 53.5 44 54.5
Ca_18013_v3 Cicer arietinum L. HOM05D000619 ORTHO05D008420 7.8e-06 53.5 50 50.0
FAN05G2000 Fragaria x ananassa HOM05D000619 ORTHO05D002839 7.8e-06 53.5 46 47.8
FAN22G1595 Fragaria x ananassa HOM05D000619 ORTHO05D008420 7.8e-06 53.5 59 50.8
Glyma.18G004200 Glycine max HOM05D000619 ORTHO05D008420 7.8e-06 53.5 50 54.0
Lj4g0011352 Lotus japonicus HOM05D000619 ORTHO05D008420 7.8e-06 53.5 50 54.0
Medtr3g084930 Medicago truncatula HOM05D000619 ORTHO05D008420 7.8e-06 53.5 44 56.8
GSVIVG01030193001 Vitis vinifera HOM05D000619 ORTHO05D002839 7.8e-06 53.5 61 42.6


User provided reference genes

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