Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.2e-73 279.6 134 100.0
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.6e-57 226.1 147 78.2
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 1.8e-56 222.6 147 78.2
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 4.0e-56 221.5 148 78.4
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 6.8e-56 220.7 148 78.4
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.5e-55 219.5 148 77.7
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.5e-55 219.5 148 77.7
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 3.7e-54 214.9 151 75.5
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 4.8e-54 214.5 151 74.2
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 7.0e-53 210.7 150 72.7
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 9.1e-53 210.3 151 74.2
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 7.7e-52 207.2 152 73.7
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 7.7e-52 207.2 152 73.7
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 7.7e-52 207.2 152 73.7
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.0e-51 206.8 152 73.7
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.0e-51 206.8 152 73.7
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 2.2e-51 205.7 151 70.9
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 6.5e-51 204.1 150 70.7
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.1e-50 203.4 150 71.3
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.0e-43 180.3 149 66.4
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.9e-43 178.7 154 62.3
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 5.0e-43 177.9 150 66.0
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.9e-42 176.0 155 61.3
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.3e-38 163.3 160 55.0
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.9e-38 162.2 156 56.4
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 6.4e-38 161.0 156 56.4
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 8.3e-38 160.6 158 55.1
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.8e-37 159.5 159 56.0
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.8e-37 159.5 155 55.5
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 1.8e-37 159.5 156 55.1
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.1e-37 158.3 156 55.8
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 4.1e-37 158.3 156 55.1
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 5.4e-37 157.9 155 56.1
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 9.2e-37 157.1 157 53.5
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 9.2e-37 157.1 157 56.7
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.2e-36 156.8 156 55.8
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 2.7e-36 155.6 145 55.9
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 3.5e-36 155.2 155 54.8
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 4.6e-36 154.8 157 55.4
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 5.9e-36 154.5 152 55.9
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.0e-35 153.7 147 56.5
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 1.0e-35 153.7 152 55.9
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.3e-35 153.3 158 54.4
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.3e-35 153.3 152 55.3
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.7e-35 152.9 152 55.3
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.7e-35 152.9 155 54.8
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.3e-35 152.5 157 54.8
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.3e-35 152.5 157 54.8
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.9e-35 152.1 150 57.3
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 5.0e-35 151.4 157 54.1
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 5.0e-35 151.4 152 55.3
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 5.0e-35 151.4 153 52.9
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 5.0e-35 151.4 159 52.8
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 5.0e-35 151.4 155 52.3
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 5.0e-35 151.4 153 55.6
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 6.6e-35 151.0 155 53.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 6.6e-35 151.0 158 53.8
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.1e-34 150.2 156 53.8
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.9e-34 149.4 109 70.6
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.9e-34 149.4 150 56.0
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.5e-34 149.1 158 51.9
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 2.5e-34 149.1 156 54.5
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 3.3e-34 148.7 152 53.3
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 3.3e-34 148.7 146 56.8
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 3.3e-34 148.7 152 54.6
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 3.3e-34 148.7 157 52.2
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 4.3e-34 148.3 151 53.6
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 5.6e-34 147.9 151 53.0
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 7.3e-34 147.5 147 54.4
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 9.5e-34 147.1 146 54.1
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 9.5e-34 147.1 155 52.3
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.2e-33 146.7 152 52.6
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.6e-33 146.4 159 53.5
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.1e-33 146.0 147 56.5
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.1e-33 146.0 153 56.2
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.1e-33 146.0 153 56.2
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.8e-33 145.6 148 54.1
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 2.8e-33 145.6 157 51.0
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 4.7e-33 144.8 154 50.6
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 6.2e-33 144.4 157 51.6
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 6.2e-33 144.4 160 53.1
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.4e-32 143.3 75 92.0
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.4e-32 143.3 154 51.3
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.4e-32 143.3 156 50.0
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.8e-32 142.9 156 51.3
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-32 142.9 141 55.3
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-32 142.9 141 55.3
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 2.3e-32 142.5 75 92.0
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 3.1e-32 142.1 156 53.2
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 3.1e-32 142.1 159 52.8
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 3.1e-32 142.1 156 53.2
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 3.1e-32 142.1 147 54.4
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 4.0e-32 141.7 112 64.3
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 4.0e-32 141.7 147 53.7
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 4.0e-32 141.7 144 55.6
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 5.2e-32 141.4 158 51.3
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 5.2e-32 141.4 147 53.1
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 6.8e-32 141.0 156 53.8
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 6.8e-32 141.0 143 53.1
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.2e-31 140.2 159 50.3
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.0e-31 139.4 155 53.5
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 2.6e-31 139.0 109 67.9
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 2.6e-31 139.0 156 51.3
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 3.4e-31 138.7 145 53.8
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 3.4e-31 138.7 152 48.7
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.8e-31 137.9 144 53.5
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 5.8e-31 137.9 156 50.0
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 5.8e-31 137.9 156 50.0
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 7.5e-31 137.5 156 51.9
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 1.3e-30 136.7 150 53.3
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.3e-30 136.7 144 53.5
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.3e-30 136.7 143 51.7
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.9e-30 135.6 143 52.4
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.9e-30 135.6 149 52.3
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 3.7e-30 135.2 152 51.3
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 4.9e-30 134.8 113 61.9
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 6.4e-30 134.4 144 52.1
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.4e-30 134.4 113 61.9
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.4e-30 134.4 113 61.9
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 8.3e-30 134.0 113 61.9
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.4e-29 132.5 113 61.1
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 3.2e-29 132.1 113 61.9
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 5.4e-29 131.3 154 47.4
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 5.4e-29 131.3 113 61.1
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.4e-29 131.3 113 61.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 5.4e-29 131.3 144 53.5
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 7.0e-29 131.0 147 51.0
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 1.2e-28 130.2 117 58.1
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.6e-28 129.8 154 47.4
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.6e-28 129.8 156 48.7
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.0e-28 129.4 113 59.3
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 6.0e-28 127.9 155 46.5
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.3e-27 126.7 155 46.5
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.3e-27 126.7 75 80.0
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 3.0e-27 125.6 158 44.9
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 1.5e-26 123.2 111 61.3
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 1.5e-26 123.2 146 46.6
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 2.5e-26 122.5 118 55.9
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.2e-25 120.2 75 77.3
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.8e-25 119.0 151 46.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.1e-24 117.1 75 73.3
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.1e-24 117.1 75 73.3
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 8.9e-24 114.0 114 52.6
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 7.5e-23 110.9 75 70.7
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-22 110.2 65 81.5
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.1e-21 107.1 134 47.0
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.4e-21 106.7 114 49.1
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 2.4e-21 105.9 65 78.5
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 9.2e-21 104.0 155 40.0
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.6e-20 103.2 140 44.3
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 3.5e-20 102.1 132 47.7
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 6.0e-20 101.3 116 46.6
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.1e-18 97.1 132 48.5
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 2.0e-15 86.3 50 84.0
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.0e-15 86.3 136 39.7
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.1e-13 77.8 58 63.8
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 9.2e-13 77.4 98 42.9
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 6.0e-12 74.7 136 36.0
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 4.7e-09 65.1 106 36.8


User provided reference genes

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