Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 5.1e-63 244.2 120 100.0
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 3.3e-54 214.9 120 86.7
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 3.3e-54 214.9 120 86.7
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 3.3e-54 214.9 120 86.7
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 3.3e-54 214.9 120 86.7
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 9.7e-54 213.4 120 85.8
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 9.7e-54 213.4 120 85.8
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 4.8e-53 211.1 120 85.8
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-50 203.0 120 81.7
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.3e-50 203.0 120 81.7
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 6.7e-47 190.7 107 85.0
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.5e-43 177.9 120 70.0
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 8.5e-42 173.7 98 85.7
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-41 173.3 98 84.7
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 1.9e-41 172.6 98 84.7
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 3.6e-40 168.3 98 81.6
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 1.5e-38 162.9 121 66.9
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 5.7e-38 161.0 122 68.9
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 3.1e-36 155.2 120 61.7
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.5e-33 145.6 117 65.8
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.7e-32 141.4 120 60.0
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 1.0e-31 140.2 120 60.8
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.0e-31 140.2 100 68.0
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.7e-31 137.5 109 63.3
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-30 135.6 121 59.5
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 2.6e-30 135.6 121 59.5
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-28 129.4 121 57.9
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 1.8e-28 129.4 121 57.9
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 6.7e-23 110.9 117 47.0
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 1.5e-22 109.8 122 49.2
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.6e-22 109.0 115 46.1
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.3e-22 108.6 132 48.5
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.4e-22 108.2 123 48.0
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-21 105.5 134 46.3
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.8e-20 102.8 117 46.2
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.1e-20 102.1 128 48.4
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 5.3e-20 101.3 134 41.8
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 7.0e-20 100.9 99 53.5
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 9.1e-20 100.5 134 41.8
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 2.0e-19 99.4 134 41.0
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 4.5e-19 98.2 130 46.2
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.0e-18 97.1 123 42.3
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 1.3e-18 96.7 120 42.5
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 2.2e-18 95.9 116 44.0
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-18 95.9 131 42.7
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 8.5e-18 94.0 124 42.7
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-17 93.2 128 41.4
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.5e-17 93.2 115 38.3
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.9e-17 92.8 131 42.0
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.9e-17 92.8 118 43.2
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 2.5e-17 92.4 132 40.2
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 2.5e-17 92.4 132 40.2
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 3.2e-17 92.0 131 42.0
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 9.4e-17 90.5 125 39.2
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 9.4e-17 90.5 126 42.1
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 2.7e-16 89.0 130 40.0
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 3.6e-16 88.6 124 41.1
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.6e-16 88.6 90 47.8
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 3.6e-16 88.6 112 41.1
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 4.7e-16 88.2 140 40.7
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 8.0e-16 87.4 134 38.8
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 8.0e-16 87.4 111 41.4
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.4e-15 86.7 117 40.2
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 4.0e-15 85.1 133 38.3
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.2e-15 84.7 121 42.1
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.5e-14 83.2 133 38.3
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 1.5e-14 83.2 133 41.4
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-14 82.8 133 38.3
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-14 82.8 133 37.6
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.4e-14 81.6 101 44.6
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 5.7e-14 81.3 120 40.0
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 5.7e-14 81.3 120 40.0
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 7.5e-14 80.9 110 40.9
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 7.5e-14 80.9 120 40.0
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 7.5e-14 80.9 120 39.2
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 9.8e-14 80.5 118 39.0
C06p24420 Brassica napus HOM05D017967 ORTHO05D003038 9.8e-14 80.5 125 36.8
BolC6t37589H Brassica oleracea HOM05D017967 ORTHO05D003038 9.8e-14 80.5 125 36.8
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 9.8e-14 80.5 134 38.1
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 1.7e-13 79.7 118 39.8
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.8e-13 79.0 128 39.1
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 4.8e-13 78.2 107 42.1
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 4.8e-13 78.2 107 42.1
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.3e-13 77.8 100 44.0
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 8.3e-13 77.4 117 37.6
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 1.1e-12 77.0 107 38.3
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 1.4e-12 76.6 125 36.8
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 1.4e-12 76.6 157 35.0
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.8e-12 76.3 121 37.2
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-12 75.9 157 35.0
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 2.4e-12 75.9 120 35.0
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 5.4e-12 74.7 125 36.8
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 7.0e-12 74.3 133 37.6
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 7.0e-12 74.3 117 35.9
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 7.0e-12 74.3 117 37.6
A07p23300 Brassica napus HOM05D017967 ORTHO05D003038 9.1e-12 73.9 125 36.8
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 9.1e-12 73.9 120 35.8
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 9.1e-12 73.9 118 36.4
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.2e-11 73.6 122 41.8
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.2e-11 73.6 112 37.5
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 1.6e-11 73.2 125 36.8
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.6e-11 73.2 117 39.3
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.0e-11 72.8 112 37.5
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 2.0e-11 72.8 118 33.9
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 3.5e-11 72.0 110 38.2
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 3.5e-11 72.0 113 37.2
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 5.9e-11 71.2 133 36.1
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 5.9e-11 71.2 121 38.8
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 5.9e-11 71.2 117 35.0
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 7.7e-11 70.9 119 41.2
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 1.0e-10 70.5 113 37.2
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.0e-10 70.5 122 35.2
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 1.3e-10 70.1 119 34.5
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.7e-10 69.7 126 35.7
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 1.7e-10 69.7 117 35.0
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 2.9e-10 68.9 117 34.2
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.8e-10 68.6 118 37.3
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.8e-10 68.6 126 34.1
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 5.0e-10 68.2 59 61.0
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.0e-10 68.2 126 34.9
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 5.0e-10 68.2 116 33.6
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 6.6e-10 67.8 122 34.4
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 8.6e-10 67.4 118 33.9
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-09 66.6 118 34.7
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-09 66.2 129 33.3
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 3.3e-09 65.5 120 35.0
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 5.5e-09 64.7 113 36.3
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 9.5e-09 63.9 114 34.2
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.2e-08 63.5 89 37.1
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 1.2e-08 63.5 119 34.5
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.6e-08 63.2 117 31.6
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.6e-08 63.2 71 47.9
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.6e-08 63.2 92 37.0
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.6e-08 63.2 114 34.2
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 4.7e-08 61.6 115 33.9
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 6.1e-08 61.2 117 33.3
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 6.1e-08 61.2 117 32.5
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 8.0e-08 60.8 106 35.8
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.0e-07 60.5 108 32.4
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 1.4e-07 60.1 113 35.4
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.8e-07 59.7 114 33.3
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.0e-07 58.9 118 29.7
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.0e-07 58.9 120 34.2
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.0e-07 58.5 112 34.8
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 5.2e-07 58.2 97 35.1
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 6.8e-07 57.8 94 33.0
CARHR035980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.2e-06 57.0 61 50.8
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-06 56.6 50 56.0
AL1G24150 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.0e-06 56.2 86 43.0
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.0e-06 56.2 120 33.3
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 3.4e-06 55.5 109 33.0
AL1G24140 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 7.5e-06 54.3 59 44.1


User provided reference genes

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