Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 6.4e-75 283.9 133 100.0
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 6.5e-67 257.3 133 90.2
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.9e-66 255.8 133 88.7
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 3.2e-66 255.0 133 88.0
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 1.2e-65 253.1 115 100.0
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 3.0e-56 221.9 113 91.2
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 6.7e-56 220.7 134 77.6
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 6.7e-56 220.7 134 77.6
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 4.3e-55 218.0 134 79.1
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 6.3e-54 214.2 134 78.4
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.1e-50 203.4 133 69.9
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-46 189.9 120 77.5
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 1.3e-46 189.9 120 77.5
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 3.7e-46 188.3 114 79.8
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 3.1e-45 185.3 98 86.7
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.0e-43 180.3 133 62.4
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 1.0e-43 180.3 114 77.2
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-43 179.9 133 61.7
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 2.9e-43 178.7 133 61.7
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 8.5e-43 177.2 126 66.7
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 2.5e-42 175.6 133 60.2
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 7.4e-39 164.1 97 78.4
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.7e-38 162.9 122 65.6
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 6.3e-38 161.0 137 55.5
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-37 159.5 133 58.6
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-37 158.7 133 57.9
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 3.2e-34 148.7 139 53.2
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 9.4e-34 147.1 121 59.5
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.0e-32 143.7 125 53.6
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 5.2e-32 141.4 125 54.4
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 5.7e-31 137.9 110 59.1
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 7.5e-31 137.5 137 49.6
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 3.7e-30 135.2 136 50.7
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 4.8e-30 134.8 120 51.7
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 7.0e-29 131.0 127 53.5
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 5.9e-28 127.9 133 49.6
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.2e-26 121.7 124 49.2
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 5.5e-26 121.3 132 47.7
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 6.1e-25 117.9 67 76.1
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.4e-24 116.7 133 44.4
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 8.8e-24 114.0 104 52.9
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.2e-23 113.6 133 47.4
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 3.4e-23 112.1 131 42.7
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 5.7e-23 111.3 134 41.8
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 5.7e-23 111.3 125 44.8
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.3e-22 110.2 96 53.1
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-21 106.7 133 39.8
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.8e-21 106.3 133 43.6
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 4.1e-21 105.1 137 38.7
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 7.0e-21 104.4 152 37.5
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 7.0e-21 104.4 152 37.5
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 1.2e-20 103.6 121 46.3
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 3.5e-20 102.1 134 41.0
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 7.7e-20 100.9 123 42.3
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 1.0e-19 100.5 134 41.0
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 2.9e-19 99.0 134 40.3
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 2.9e-19 99.0 134 40.3
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 2.9e-19 99.0 134 40.3
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.9e-18 96.3 128 40.6
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 3.3e-18 95.5 134 41.0
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 3.3e-18 95.5 134 41.0
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-17 92.4 134 40.3
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 8.0e-17 90.9 134 38.8
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 8.0e-17 90.9 122 41.8
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 8.0e-17 90.9 122 41.8
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 8.0e-17 90.9 134 38.8
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-16 90.1 122 41.0
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-16 90.1 122 41.0
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-16 89.7 122 39.3
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.0e-16 88.6 134 35.1
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 5.2e-16 88.2 136 39.0
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 8.9e-16 87.4 134 37.3
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.0e-15 86.3 117 37.6
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 2.8e-14 82.4 129 35.7
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 6.3e-14 81.3 50 70.0
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 8.3e-14 80.9 122 37.7
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-13 80.5 121 37.2
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 1.8e-13 79.7 134 35.1
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 3.2e-13 79.0 111 37.8
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 7.0e-13 77.8 111 37.8
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 7.0e-13 77.8 111 38.7
AL1G24150 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 9.2e-13 77.4 90 46.7
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 9.2e-13 77.4 111 38.7
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 9.2e-13 77.4 121 38.8
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 9.2e-13 77.4 117 35.9
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 1.6e-12 76.6 131 35.1
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.7e-12 75.9 119 35.3
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 3.5e-12 75.5 118 38.1
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 4.5e-12 75.1 130 36.9
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 5.9e-12 74.7 128 37.5
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.0e-11 73.9 122 34.4
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 1.0e-11 73.9 130 35.4
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.3e-11 73.6 125 36.8
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 1.7e-11 73.2 120 37.5
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 3.9e-11 72.0 105 36.2
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.0e-11 71.6 122 33.6
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 6.6e-11 71.2 125 35.2
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 6.6e-11 71.2 125 35.2
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 6.6e-11 71.2 100 41.0
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 8.6e-11 70.9 121 33.9
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 8.6e-11 70.9 125 35.2
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 8.6e-11 70.9 122 36.1
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 1.5e-10 70.1 100 39.0
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 1.9e-10 69.7 135 34.8
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 2.5e-10 69.3 116 37.9
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 2.5e-10 69.3 96 38.5
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 2.5e-10 69.3 126 33.3
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.3e-10 68.9 125 32.8
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 3.3e-10 68.9 125 32.8
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 4.3e-10 68.6 116 33.6
BraA06t24090Z Brassica rapa HOM05D007482 ORTHO05D003038 5.6e-10 68.2 181 29.3
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 5.6e-10 68.2 128 32.0
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 9.5e-10 67.4 121 36.4
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 9.5e-10 67.4 129 34.1
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.6e-09 66.6 111 32.4
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.6e-09 66.6 135 32.6
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 1.6e-09 66.6 121 36.4
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 2.8e-09 65.9 121 35.5
THA.LOC104818205 Tarenaya hassleriana HOM05D005672 ORTHO05D003038 2.8e-09 65.9 118 31.4
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.6e-09 65.5 113 32.7
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 4.7e-09 65.1 118 35.6
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 6.1e-09 64.7 125 32.8
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 8.0e-09 64.3 124 35.5
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 8.0e-09 64.3 132 31.8
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.0e-08 63.9 129 33.3
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.4e-08 63.5 127 32.3
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.8e-08 63.2 122 35.2
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.8e-08 63.2 132 33.3
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.8e-08 63.2 129 33.3
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 4.0e-08 62.0 123 35.0
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 5.2e-08 61.6 121 33.1
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 5.2e-08 61.6 118 30.5
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 6.8e-08 61.2 96 38.5
AL1G24140 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 8.9e-08 60.8 62 50.0
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 8.9e-08 60.8 118 33.1
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.2e-07 60.5 116 34.5
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.5e-07 60.1 126 31.7
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.5e-07 60.1 93 35.5
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 2.0e-07 59.7 74 44.6
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 2.0e-07 59.7 118 29.7
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 2.6e-07 59.3 128 29.7
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 3.4e-07 58.9 96 36.5
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 4.4e-07 58.5 120 31.7
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 7.5e-07 57.8 116 30.2
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 7.5e-07 57.8 129 30.2
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 9.8e-07 57.4 128 29.7
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 9.8e-07 57.4 118 28.8
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.3e-06 57.0 129 30.2
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.2e-06 56.2 134 30.6
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 2.2e-06 56.2 134 30.6
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 2.9e-06 55.8 104 33.7
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 2.9e-06 55.8 124 28.2
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 2.9e-06 55.8 122 31.1
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 3.7e-06 55.5 128 26.6
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.7e-06 55.5 63 46.0
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 3.7e-06 55.5 86 39.5
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.7e-06 55.5 134 29.9
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 4.9e-06 55.1 41 56.1
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 4.9e-06 55.1 57 47.4
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 4.9e-06 55.1 57 47.4
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 6.4e-06 54.7 126 28.6
AT1G12665 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 8.3e-06 54.3 59 44.1
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 8.3e-06 54.3 132 28.8


User provided reference genes

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