Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 8.1e-66 253.4 115 100.0
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 8.1e-66 253.4 115 100.0
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-60 235.3 115 92.2
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 2.3e-60 235.3 115 92.2
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 5.1e-60 234.2 115 92.2
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-53 213.0 116 84.5
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 1.2e-53 213.0 116 84.5
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 3.0e-52 208.4 116 84.5
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 4.3e-51 204.5 116 83.6
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 1.8e-49 199.1 95 93.7
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 7.1e-46 187.2 115 73.9
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 3.5e-45 184.9 94 90.4
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-42 175.3 102 80.4
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 2.8e-42 175.3 102 80.4
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 4.8e-42 174.5 96 83.3
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-40 169.9 115 67.8
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 1.3e-39 166.4 96 80.2
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.7e-39 166.0 114 66.7
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 4.9e-39 164.5 114 65.8
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 4.9e-39 164.5 115 65.2
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 1.1e-38 163.3 94 80.9
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.2e-38 161.8 115 66.1
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 9.3e-38 160.2 115 63.5
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.1e-33 145.2 119 55.5
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-32 142.9 115 60.0
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-32 141.0 115 60.0
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 5.8e-32 141.0 115 60.0
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 4.2e-30 134.8 115 55.7
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.2e-30 134.8 115 53.9
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.2e-29 133.3 121 53.7
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 2.3e-28 129.0 118 53.4
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.0e-28 128.6 110 52.7
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-26 122.1 117 54.7
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 3.7e-26 121.7 92 62.0
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 3.7e-26 121.7 119 48.7
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-25 120.2 113 52.2
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 5.3e-25 117.9 67 76.1
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.2e-24 116.7 114 50.9
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.0e-23 113.6 114 49.1
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 5.0e-23 111.3 115 47.0
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-22 110.2 96 53.1
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 5.5e-22 107.8 113 45.1
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 9.3e-22 107.1 116 44.0
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.7e-21 105.5 94 53.2
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 6.1e-21 104.4 110 47.3
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 2.3e-20 102.4 115 41.7
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 6.7e-20 100.9 119 40.3
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.9e-19 99.4 115 44.3
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.9e-19 99.4 110 44.5
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 2.5e-19 99.0 116 45.7
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 4.3e-19 98.2 115 46.1
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 5.7e-19 97.8 116 44.0
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 9.7e-19 97.1 138 37.7
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 9.7e-19 97.1 138 37.7
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 1.3e-18 96.7 116 44.8
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 2.8e-18 95.5 116 44.0
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-18 95.5 116 44.0
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 2.8e-18 95.5 116 44.0
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 3.1e-17 92.0 116 44.8
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-17 92.0 116 44.8
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.1e-17 91.7 110 42.7
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-16 89.0 116 44.0
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 4.5e-16 88.2 116 40.5
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-15 87.0 115 42.6
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.0e-15 87.0 115 42.6
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-15 86.7 117 41.0
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 1.3e-15 86.7 117 41.0
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 1.7e-15 86.3 118 42.4
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-15 85.9 117 40.2
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 2.2e-15 85.9 117 40.2
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 3.8e-15 85.1 116 40.5
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.4e-14 83.2 116 36.2
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 5.5e-14 81.3 50 70.0
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.2e-14 80.9 99 39.4
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.6e-13 79.7 116 39.7
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.0e-12 77.0 103 40.8
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.0e-12 77.0 102 42.2
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 3.0e-12 75.5 93 41.9
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 3.9e-12 75.1 97 39.2
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 5.1e-12 74.7 93 41.9
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 5.1e-12 74.7 93 43.0
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 5.1e-12 74.7 100 43.0
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 5.1e-12 74.7 111 36.9
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 6.7e-12 74.3 93 43.0
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 2.0e-11 72.8 110 38.2
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.3e-11 71.6 112 35.7
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.3e-11 71.6 98 37.8
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 5.7e-11 71.2 100 41.0
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 7.4e-11 70.9 99 38.4
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 9.7e-11 70.5 102 40.2
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 1.3e-10 70.1 100 39.0
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 1.7e-10 69.7 100 41.0
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.2e-10 69.3 112 34.8
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 2.2e-10 69.3 97 40.2
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 2.8e-10 68.9 96 38.5
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 2.8e-10 68.9 96 38.5
AL1G24150 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.7e-10 68.6 72 48.6
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 3.7e-10 68.6 106 36.8
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 6.3e-10 67.8 100 35.0
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 6.3e-10 67.8 102 36.3
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 6.3e-10 67.8 104 38.5
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 6.3e-10 67.8 104 38.5
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 8.2e-10 67.4 104 38.5
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 8.2e-10 67.4 95 38.9
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 1.4e-09 66.6 95 38.9
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.8e-09 66.2 100 35.0
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 2.4e-09 65.9 117 34.2
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 2.4e-09 65.9 114 37.7
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.1e-09 65.5 112 33.0
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 3.1e-09 65.5 110 38.2
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 3.1e-09 65.5 99 35.4
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 4.1e-09 65.1 114 37.7
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 4.1e-09 65.1 115 33.0
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 5.3e-09 64.7 115 33.0
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.9e-09 64.3 117 34.2
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 6.9e-09 64.3 115 33.0
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 6.9e-09 64.3 114 36.8
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 9.1e-09 63.9 97 36.1
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 9.1e-09 63.9 97 37.1
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 9.1e-09 63.9 94 35.1
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 9.1e-09 63.9 101 35.6
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 1.2e-08 63.5 112 36.6
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 2.6e-08 62.4 112 35.7
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 3.4e-08 62.0 99 37.4
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.5e-08 61.6 97 36.1
BraA06t24090Z Brassica rapa HOM05D007482 ORTHO05D003038 5.9e-08 61.2 163 28.8
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 5.9e-08 61.2 115 35.7
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 5.9e-08 61.2 96 38.5
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 7.7e-08 60.8 94 37.2
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 1.0e-07 60.5 96 34.4
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.0e-07 60.5 94 35.1
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.3e-07 60.1 111 35.1
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.3e-07 60.1 93 35.5
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.7e-07 59.7 74 44.6
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.9e-07 58.9 111 34.2
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 2.9e-07 58.9 99 34.3
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 2.9e-07 58.9 96 36.5
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 3.8e-07 58.5 94 34.0
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.0e-07 58.2 110 31.8
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 8.5e-07 57.4 110 35.5
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 8.5e-07 57.4 110 31.8
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.1e-06 57.0 54 46.3
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.9e-06 56.2 96 35.4
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.5e-06 55.8 110 30.9
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 2.5e-06 55.8 107 30.8
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 2.5e-06 55.8 96 33.3
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 2.5e-06 55.8 96 32.3
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.2e-06 55.5 63 46.0
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 3.2e-06 55.5 86 39.5
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 4.2e-06 55.1 41 56.1
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 4.2e-06 55.1 57 47.4
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 4.2e-06 55.1 57 47.4
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 7.2e-06 54.3 108 28.7
AL1G24140 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 7.2e-06 54.3 44 56.8
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 9.4e-06 53.9 96 33.3
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 9.4e-06 53.9 54 48.1


User provided reference genes

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