Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34255 Brassica carinata HOM05D000162 ORTHO05D003288 5.1e-29 132.1 216 100.0
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 1.3e-16 90.9 54 83.3
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 2.2e-16 90.1 54 85.2
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 3.8e-16 89.4 54 81.5
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 8.4e-16 88.2 54 83.3
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 8.4e-16 88.2 54 83.3
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 8.4e-16 88.2 54 83.3
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 8.4e-16 88.2 54 83.3
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 1.9e-15 87.0 51 86.3
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 1.9e-15 87.0 54 83.3
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 1.9e-15 87.0 51 86.3
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 1.9e-15 87.0 54 81.5
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 1.9e-15 87.0 51 86.3
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 1.9e-15 87.0 54 83.3
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 2.5e-15 86.7 54 81.5
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 5.5e-15 85.5 54 77.8
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 7.1e-15 85.1 52 78.8
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 7.1e-15 85.1 52 78.8
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 1.2e-14 84.3 54 75.9
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 1.2e-14 84.3 54 75.9
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 2.1e-14 83.6 54 75.9
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 2.7e-14 83.2 54 74.1
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 3.5e-14 82.8 54 79.6
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.6e-14 82.4 54 75.9
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 6.0e-14 82.0 53 77.4
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 6.0e-14 82.0 50 76.0
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 7.9e-14 81.6 54 79.6
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 1.0e-13 81.3 53 75.5
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 1.0e-13 81.3 49 83.7
BolC5t33057H Brassica oleracea HOM05D000162 ORTHO05D003288 1.8e-13 80.5 54 72.2
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 2.3e-13 80.1 54 77.8
C08p47400 Brassica napus HOM05D000162 ORTHO05D003288 2.3e-13 80.1 55 74.5
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 3.9e-13 79.3 54 75.9
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 3.9e-13 79.3 54 75.9
Thhalv10020312m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 8.7e-13 78.2 52 76.9
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 2.5e-12 76.6 54 70.4
BraA09t41809Z Brassica rapa HOM05D000162 ORTHO05D003288 2.5e-12 76.6 54 70.4
Carub.0001s1231 Capsella rubella HOM05D000162 ORTHO05D000090 1.3e-11 74.3 51 72.5
AL3G36780 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.1e-11 73.6 51 76.5
CARHR051050 Cardamine hirsuta HOM05D000162 ORTHO05D003288 8.2e-11 71.6 53 67.9
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.1e-10 71.2 54 66.7
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 1.1e-10 71.2 43 81.4
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 1.1e-10 71.2 43 81.4
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 1.8e-10 70.5 39 87.2
C05p38870 Brassica napus HOM05D000162 ORTHO05D003288 1.8e-10 70.5 54 66.7
AL2G12380 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 2.4e-10 70.1 53 66.0
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 3.1e-10 69.7 53 67.9
AT1G62590 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 5.3e-10 68.9 54 66.7
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 5.3e-10 68.9 54 66.7
CARHR055290 Cardamine hirsuta HOM05D000162 ORTHO05D003288 6.9e-10 68.6 53 62.3
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 9.0e-10 68.2 38 86.8
Carub.0002s0148 Capsella rubella HOM05D000162 ORTHO05D003288 9.0e-10 68.2 53 66.0
Thhalv10002441m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.0e-10 68.2 42 83.3
AL2G18840 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.2e-09 67.8 54 64.8
AT1G63330 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 1.5e-09 67.4 53 66.0
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 1.5e-09 67.4 44 72.7
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 1.5e-09 67.4 44 72.7
Thhalv10023344m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.5e-09 67.4 54 61.1
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.0e-09 67.0 53 66.0
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 2.6e-09 66.6 37 86.5
CARHR051150 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.6e-09 66.6 53 62.3
BcaC07g41727 Brassica carinata HOM05D000162 ORTHO05D000090 4.5e-09 65.9 38 81.6
CARHR048780 Cardamine hirsuta HOM05D000162 ORTHO05D003288 4.5e-09 65.9 53 62.3
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 4.5e-09 65.9 54 64.8
Carub.0002s0192 Capsella rubella HOM05D000162 ORTHO05D003288 7.6e-09 65.1 53 66.0
CARHR048540 Cardamine hirsuta HOM05D000162 ORTHO05D003288 7.6e-09 65.1 54 61.1
AT1G63150 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.3e-08 64.3 54 63.0
CARHR046830 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.3e-08 64.3 51 62.7
BraA09t37036Z Brassica rapa HOM05D000162 ORTHO05D003288 2.2e-08 63.5 52 63.5
Thhalv10007258m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.2e-08 63.5 41 80.5
THA.LOC104814143 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.2e-08 63.5 51 56.9
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 2.9e-08 63.2 33 90.9
C09p16260 Brassica napus HOM05D000162 ORTHO05D003288 3.8e-08 62.8 53 62.3
BolC9t54536H Brassica oleracea HOM05D000162 ORTHO05D003288 3.8e-08 62.8 53 62.3
CARHR048080 Cardamine hirsuta HOM05D000162 ORTHO05D003288 3.8e-08 62.8 54 63.0
A09p13890 Brassica napus HOM05D000162 ORTHO05D003288 5.0e-08 62.4 54 61.1
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 6.5e-08 62.0 52 59.6
Carub.0002s0209 Capsella rubella HOM05D000162 ORTHO05D003288 8.5e-08 61.6 53 60.4
CARHR012890 Cardamine hirsuta HOM05D000162 ORTHO05D003288 8.5e-08 61.6 47 63.8
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 1.1e-07 61.2 52 59.6
BolC3t21476H Brassica oleracea HOM05D000162 ORTHO05D003288 1.1e-07 61.2 52 59.6
BraA09t41633Z Brassica rapa HOM05D000162 ORTHO05D003288 1.1e-07 61.2 32 90.6
THA.LOC104803570 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.4e-07 60.8 39 71.8
CARHR048470 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.9e-07 60.5 48 62.5
Thhalv10023987m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.2e-07 59.7 42 71.4
AL2G12830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 5.5e-07 58.9 46 65.2
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 7.2e-07 58.5 54 59.3
Thhalv10023976m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.2e-06 57.8 42 69.0
AL1G24180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.6e-06 57.4 34 82.4
Thhalv10023350m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.6e-06 57.4 42 69.0
Thhalv10023354m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.1e-06 57.0 46 63.0
BcaB08g34253 Brassica carinata HOM05D000162 ORTHO05D000090 4.6e-06 55.8 33 78.8
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 4.6e-06 55.8 32 84.4
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 4.6e-06 55.8 32 84.4
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 4.6e-06 55.8 32 84.4
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 4.6e-06 55.8 32 84.4
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 4.6e-06 55.8 32 84.4
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.6e-06 55.8 46 63.0
AT1G12700 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 7.9e-06 55.1 34 76.5
BcaC07g41684 Brassica carinata HOM05D000162 ORTHO05D000090 7.9e-06 55.1 32 81.2
C08p47150 Brassica napus HOM05D000162 ORTHO05D000090 7.9e-06 55.1 32 81.2
BolC8t52254H Brassica oleracea HOM05D000162 ORTHO05D000090 7.9e-06 55.1 32 81.2


User provided reference genes

Program Settings