Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.2e-292 1008.4 591 100.0
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 8.5e-236 820.5 601 83.0
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 4.7e-234 814.7 601 80.4
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 5.9e-229 797.7 626 77.8
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 2.4e-214 749.2 617 73.4
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 4.1e-214 748.4 614 74.3
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.7e-199 699.9 612 74.8
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.2e-197 693.7 618 70.2
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 3.9e-196 688.7 613 71.9
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.2e-192 677.2 608 69.9
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 3.2e-190 669.1 613 72.1
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 6.0e-189 664.8 606 68.2
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 6.0e-189 664.8 606 68.2
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.7e-183 646.7 620 65.2
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 7.3e-179 631.3 518 79.7
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 2.0e-176 623.2 615 69.9
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.2e-166 589.3 627 63.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 6.3e-138 495.4 633 51.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.3e-114 417.9 407 60.4
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 4.1e-89 333.2 633 37.8
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.1e-86 325.1 367 63.8
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 7.3e-86 322.4 367 63.5
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 8.0e-85 318.9 620 37.3
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.0e-84 318.5 623 36.6
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.5e-83 314.7 625 37.3
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.5e-83 314.7 647 35.5
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 2.2e-82 310.8 650 36.5
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.9e-82 310.5 647 35.1
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 5.4e-81 306.2 675 39.1
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 9.2e-81 305.4 650 36.3
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 6.0e-80 302.8 660 35.5
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 2.3e-79 300.8 673 34.3
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 6.6e-79 299.3 659 35.2
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.8e-77 293.9 644 35.9
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.7e-77 293.1 647 35.7
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 8.1e-77 292.4 665 35.3
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.4e-76 291.6 657 34.6
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.1e-76 290.4 655 36.2
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.0e-76 290.0 683 34.0
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.5e-75 288.1 707 34.5
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 4.4e-75 286.6 672 37.6
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 7.5e-75 285.8 644 34.2
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 9.8e-75 285.4 390 55.6
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.7e-74 284.6 646 35.8
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.7e-74 284.6 651 35.5
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.9e-73 281.2 652 38.7
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 4.1e-73 280.0 686 33.8
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.2e-72 278.5 637 35.5
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 2.1e-72 277.7 649 34.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.1e-72 277.7 688 32.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.1e-72 277.7 693 38.1
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 2.7e-72 277.3 726 35.7
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.7e-72 277.3 620 39.5
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 4.6e-72 276.6 677 33.7
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.3e-71 275.0 670 34.2
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.0e-71 273.9 685 32.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 8.6e-71 272.3 617 33.7
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 8.6e-71 272.3 703 35.0
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.1e-70 271.9 697 33.0
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.5e-70 271.6 681 33.3
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 4.3e-70 270.0 665 37.0
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 7.3e-70 269.2 641 36.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.2e-69 268.5 640 33.9
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.6e-69 268.1 621 34.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 8.1e-69 265.8 688 32.3
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 8.1e-69 265.8 707 32.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 8.1e-69 265.8 701 32.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.1e-68 265.4 661 34.5
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.4e-68 265.0 687 32.2
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 4.0e-68 263.5 315 53.0
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 5.2e-68 263.1 686 32.2
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.5e-67 261.5 325 52.6
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.0e-67 261.2 569 36.7
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 9.9e-67 258.8 678 33.3
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.7e-66 258.1 614 33.6
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.2e-66 257.7 626 34.0
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.1e-65 255.4 699 32.6
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.9e-65 254.6 694 32.7
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 3.2e-65 253.8 655 33.7
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.5e-64 250.4 632 33.9
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.0e-63 248.8 603 32.2
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 3.9e-63 246.9 711 32.2
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.5e-62 245.0 659 32.8
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.4e-59 233.8 676 32.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 5.8e-59 233.0 720 29.2
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.3e-58 231.9 788 28.7
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.9e-57 228.0 575 31.8
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.1e-57 226.1 706 35.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 9.3e-57 225.7 643 33.3
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.6e-56 224.9 383 43.6
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.8e-56 222.6 701 30.5
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.0e-55 222.2 777 29.1
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.0e-55 222.2 594 34.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 3.0e-55 220.7 829 29.2
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.3e-54 217.2 714 32.1
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 5.6e-54 216.5 630 33.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 9.6e-54 215.7 595 33.8
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 1.3e-53 215.3 833 28.9
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.6e-53 213.8 687 30.4
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.2e-53 213.0 634 32.0
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.2e-53 213.0 796 31.8
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.8e-52 211.5 730 30.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.3e-52 209.9 640 33.4
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.2e-51 208.8 559 31.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 9.9e-51 205.7 665 31.3
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 9.9e-51 205.7 631 33.3
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.3e-50 205.3 425 39.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.1e-49 202.2 740 28.5
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 9.3e-49 199.1 726 29.2
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 3.0e-47 194.1 656 30.5
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.9e-47 193.7 850 28.5
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.5e-46 191.8 646 30.8
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.5e-46 191.0 664 31.8
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 4.3e-46 190.3 580 30.0
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.8e-44 184.9 602 30.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.4e-44 184.5 765 27.3
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-43 182.2 600 30.5
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 4.5e-43 180.3 694 30.5
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 4.9e-42 176.8 589 29.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.1e-41 175.6 612 33.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.1e-41 172.9 597 28.3
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.2e-40 172.2 588 36.6
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.6e-40 171.8 685 27.4
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 2.1e-40 171.4 598 30.3
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.8e-39 168.3 763 29.4
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 1.3e-34 152.1 275 42.5
BolC5t30033H Brassica oleracea HOM05D000639 ORTHO05D032511 4.2e-33 147.1 256 44.1
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.5e-33 146.7 386 33.4
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 6.0e-32 143.3 436 30.0
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.6e-29 135.2 250 35.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 9.0e-28 129.4 686 23.8
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.7e-26 125.2 218 39.4
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.8e-26 124.0 158 44.9
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 6.1e-24 116.7 315 31.4
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.7e-23 113.2 318 33.0
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 6.7e-23 113.2 94 54.3
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 4.3e-22 110.5 90 55.6
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 9.7e-22 109.4 304 30.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.6e-21 108.6 85 56.5
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 2.2e-21 108.2 122 43.4
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.7e-21 107.5 96 54.2
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.8e-21 107.1 123 48.0
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 8.2e-21 106.3 301 32.2
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.4e-20 104.8 299 30.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.4e-20 104.8 308 32.1
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 3.1e-20 104.4 300 30.7
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 2.0e-19 101.7 68 79.4
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.9e-17 95.1 528 24.6
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 2.7e-16 91.3 120 42.5
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.8e-15 88.6 82 50.0
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.3e-15 88.2 79 58.2
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.8e-13 81.3 564 25.5
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 8.2e-13 79.7 139 38.1
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-11 75.9 64 53.1
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.5e-11 75.5 89 43.8
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.6e-11 74.7 231 30.7
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.4e-11 74.3 88 44.3
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 7.7e-11 73.2 88 44.3
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.3e-10 72.4 686 23.8
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.3e-10 72.4 58 58.6
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 2.2e-10 71.6 82 42.7
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.5e-10 69.7 486 23.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-09 68.6 581 24.1
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 4.7e-08 63.9 88 42.0
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.5e-06 58.9 328 28.4


User provided reference genes

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