Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.6e-56 222.6 124 100.0
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 2.7e-51 205.3 126 91.3
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.0e-50 203.4 125 92.8
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.3e-50 203.0 124 91.9
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.8e-50 202.6 126 89.7
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.8e-50 202.6 125 91.2
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 3.9e-50 201.4 126 91.3
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 3.9e-50 201.4 126 91.3
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 5.1e-50 201.1 126 88.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.5e-49 199.5 124 91.1
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.9e-49 199.1 124 89.5
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 4.3e-49 198.0 124 88.7
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 5.7e-49 197.6 124 91.1
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 3.7e-48 194.9 124 87.9
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 3.4e-46 188.3 124 85.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 5.0e-45 184.5 136 81.6
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 4.3e-41 171.4 126 81.0
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 3.7e-40 168.3 93 100.0
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.1e-39 166.8 124 78.2
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 6.9e-39 164.1 119 78.2
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 9.1e-39 163.7 116 78.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 9.1e-39 163.7 120 75.0
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.2e-38 163.3 120 75.8
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.3e-37 159.8 109 78.9
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.3e-37 159.8 110 79.1
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.7e-37 159.5 110 80.0
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.7e-37 159.5 110 80.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 2.2e-37 159.1 109 79.8
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 2.2e-37 159.1 109 80.7
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 2.9e-37 158.7 111 75.7
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 2.9e-37 158.7 106 81.1
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 2.9e-37 158.7 121 71.9
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.8e-37 158.3 110 77.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 3.8e-37 158.3 109 79.8
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 5.0e-37 157.9 121 72.7
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 5.0e-37 157.9 121 72.7
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 5.0e-37 157.9 109 78.0
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 5.0e-37 157.9 110 77.3
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 6.5e-37 157.5 115 74.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 6.5e-37 157.5 108 78.7
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 8.5e-37 157.1 108 79.6
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 8.5e-37 157.1 106 80.2
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 8.5e-37 157.1 110 79.1
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.1e-36 156.8 110 78.2
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.1e-36 156.8 110 78.2
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.1e-36 156.8 110 78.2
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.4e-36 156.4 119 71.4
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.4e-36 156.4 119 71.4
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.4e-36 156.4 125 71.2
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.9e-36 156.0 109 78.0
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.5e-36 155.6 108 77.8
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 4.2e-36 154.8 128 69.5
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 5.5e-36 154.5 112 74.1
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 5.5e-36 154.5 119 76.5
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 7.2e-36 154.1 109 76.1
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 7.2e-36 154.1 109 76.1
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.2e-35 153.3 117 72.6
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.2e-35 153.3 118 72.0
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.6e-35 152.9 117 70.9
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.6e-35 152.9 109 78.0
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.7e-35 152.1 120 69.2
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 2.7e-35 152.1 110 75.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.7e-35 152.1 119 72.3
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 4.7e-35 151.4 119 71.4
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 4.7e-35 151.4 109 75.2
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 6.1e-35 151.0 110 77.3
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.9e-35 150.6 107 77.6
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 7.9e-35 150.6 107 76.6
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.9e-35 150.6 114 73.7
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.9e-35 150.6 104 78.8
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.0e-34 150.2 106 77.4
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.0e-34 150.2 106 77.4
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-34 149.8 117 73.5
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 1.4e-34 149.8 110 73.6
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.4e-34 149.8 118 69.5
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.4e-34 149.8 109 73.4
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.8e-34 149.4 108 74.1
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 2.3e-34 149.1 105 78.1
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.3e-34 149.1 106 75.5
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.3e-34 149.1 109 75.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.3e-34 149.1 106 79.2
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 2.3e-34 149.1 120 68.3
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.0e-34 148.7 122 70.5
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.0e-34 148.7 107 76.6
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.9e-34 148.3 108 75.0
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 3.9e-34 148.3 110 72.7
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 3.9e-34 148.3 119 69.7
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 5.1e-34 147.9 110 73.6
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 6.7e-34 147.5 106 79.2
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 6.7e-34 147.5 108 72.2
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.1e-33 146.7 106 74.5
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 3.3e-33 145.2 106 76.4
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.3e-33 145.2 106 75.5
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 9.7e-33 143.7 107 72.9
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.3e-32 143.3 122 67.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.2e-32 142.5 106 72.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.3e-32 141.0 108 68.5
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 1.4e-31 139.8 98 75.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.8e-31 139.4 111 69.4
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.8e-31 139.4 106 70.8
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.4e-31 139.0 113 67.3
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.4e-31 139.0 113 67.3
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.1e-31 138.7 108 75.0
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 5.3e-31 137.9 114 65.8
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 9.1e-31 137.1 105 72.4
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.6e-30 135.6 114 64.9
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 2.6e-30 135.6 104 72.1
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.9e-29 132.1 118 62.7
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.8e-29 131.7 110 65.5
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 3.8e-29 131.7 110 68.2
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 8.5e-29 130.6 107 65.4
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.5e-28 129.8 98 75.5
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.9e-28 129.4 123 60.2
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 3.2e-28 128.6 134 57.5
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 4.2e-28 128.3 106 63.2
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 4.2e-28 128.3 118 65.3
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 4.7e-27 124.8 109 64.2
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 6.1e-27 124.4 106 65.1
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 8.0e-27 124.0 88 76.1
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 3.0e-26 122.1 105 63.8
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 4.4e-25 118.2 108 59.3
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 7.5e-25 117.5 86 73.3
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 7.0e-23 110.9 166 45.8
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 5.9e-22 107.8 99 60.6
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.0e-21 107.1 100 58.0
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.7e-21 106.3 96 59.4
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.8e-21 105.1 191 39.8
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.5e-21 104.4 92 63.0
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 6.5e-21 104.4 143 49.0
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.2e-20 102.1 106 54.7
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 4.2e-20 101.7 91 68.1
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 2.6e-17 92.4 121 45.5
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 3.7e-16 88.6 117 45.3
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.4e-15 86.7 60 78.3
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 7.0e-15 84.3 96 44.8
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 7.0e-15 84.3 75 62.7
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.2e-14 83.6 59 78.0
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 5.9e-14 81.3 97 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.3e-13 80.1 113 42.5
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.7e-13 79.7 61 68.9
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.5e-12 76.6 116 46.6
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.5e-12 76.6 52 75.0
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.5e-12 76.6 49 71.4
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.2e-12 75.5 47 78.7
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.4e-10 70.1 90 52.2
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.0e-10 68.9 46 80.4
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.4e-09 65.5 49 75.5


User provided reference genes

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