Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 8.9e-89 330.5 198 100.0
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.2e-80 303.5 198 91.4
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 2.9e-79 298.9 198 83.3
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 2.9e-79 298.9 198 83.3
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 4.2e-78 295.0 198 89.4
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.2e-72 276.9 227 73.1
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 1.2e-72 276.9 198 78.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 5.8e-72 274.6 198 78.3
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 5.8e-72 274.6 198 77.3
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 5.8e-72 274.6 198 78.3
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 2.4e-70 269.2 198 81.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.3e-68 262.7 198 75.3
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 5.6e-67 258.1 209 71.3
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.9e-63 245.7 199 70.4
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.8e-63 245.4 209 74.6
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 2.1e-61 239.6 199 68.8
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 2.7e-61 239.2 212 68.4
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.1e-59 233.8 199 67.8
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 3.3e-59 232.3 206 66.0
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 9.0e-49 197.6 198 68.2
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 3.0e-44 182.6 142 74.6
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 9.7e-43 177.6 175 57.1
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 4.1e-41 172.2 181 57.5
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.9e-38 163.3 196 51.5
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.9e-38 163.3 175 51.4
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 4.2e-38 162.2 174 51.1
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 5.5e-38 161.8 175 50.9
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 9.4e-38 161.0 179 52.5
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 4.7e-37 158.7 177 57.1
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.0e-36 157.5 169 53.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.9e-36 155.6 177 58.2
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 3.3e-35 152.5 166 52.4
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 3.3e-35 152.5 198 52.5
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.4e-35 152.1 183 50.8
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 5.7e-35 151.8 173 51.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 7.4e-35 151.4 173 51.4
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 9.7e-35 151.0 177 54.8
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 1.7e-34 150.2 170 53.5
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.8e-34 149.4 162 51.2
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 4.8e-34 148.7 171 49.1
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 1.8e-33 146.7 170 48.2
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 4.1e-33 145.6 175 49.1
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 5.3e-33 145.2 187 52.4
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 2.0e-32 143.3 178 46.6
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.6e-32 142.9 174 55.7
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.5e-32 142.5 175 54.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 3.5e-32 142.5 199 51.8
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 4.5e-32 142.1 175 54.9
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 7.7e-32 141.4 155 51.0
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-31 140.6 175 53.7
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.7e-31 140.2 175 52.6
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 2.9e-31 139.4 168 49.4
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.8e-31 139.0 175 52.6
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 5.0e-31 138.7 169 49.7
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 3.2e-30 136.0 174 48.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 3.2e-30 136.0 185 51.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.5e-30 135.2 196 43.4
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 5.5e-30 135.2 195 45.6
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 5.5e-30 135.2 202 42.1
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 7.2e-30 134.8 163 53.4
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.6e-29 133.7 175 48.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.6e-29 133.7 175 48.6
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 2.7e-29 132.9 174 48.9
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 2.7e-29 132.9 175 49.7
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 6.1e-29 131.7 175 49.7
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 6.1e-29 131.7 175 49.7
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.0e-28 131.0 190 44.7
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.4e-28 130.6 201 41.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 6.7e-28 128.3 170 49.4
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.1e-27 127.5 157 45.9
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 4.4e-27 125.6 175 53.7
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.3e-26 124.0 172 48.3
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.7e-26 123.6 161 52.2
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 6.3e-26 121.7 174 42.0
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 6.3e-26 121.7 193 40.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 4.1e-25 119.0 160 46.2
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.2e-24 117.5 164 51.8
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.2e-24 117.5 160 45.6
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 2.0e-24 116.7 170 44.7
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 3.5e-24 115.9 170 42.9
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 5.9e-24 115.2 164 43.3
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 7.7e-24 114.8 173 48.0
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.0e-23 114.4 170 47.6
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.3e-23 114.0 161 46.0
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 3.8e-23 112.5 193 38.9
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 3.8e-23 112.5 200 41.5
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 3.2e-22 109.4 158 42.4
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 5.5e-22 108.6 170 45.3
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.2e-21 107.5 174 45.4
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.7e-21 106.3 159 46.5
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 6.1e-21 105.1 184 38.0
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.8e-20 103.6 155 49.0
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 2.3e-20 103.2 165 40.0
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.2e-20 102.1 214 34.6
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 8.8e-20 101.3 182 35.7
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 8.8e-20 101.3 166 51.2
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.4e-19 99.4 72 68.1
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 7.5e-19 98.2 166 50.0
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 9.8e-19 97.8 175 42.9
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 1.3e-18 97.4 108 54.6
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 3.7e-18 95.9 164 38.4
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.3e-18 95.1 175 45.7
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 1.1e-17 94.4 152 45.4
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 1.1e-17 94.4 202 41.1
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.1e-17 94.4 217 35.5
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 1.1e-17 94.4 158 39.2
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 4.1e-17 92.4 178 43.8
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 7.0e-17 91.7 168 42.3
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 7.0e-17 91.7 198 35.4
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-16 90.9 154 43.5
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-16 90.9 154 43.5
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 5.9e-16 88.6 184 41.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.0e-15 87.8 159 42.8
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 1.7e-15 87.0 192 40.1
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 5.0e-15 85.5 107 46.7
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.5e-14 84.0 175 34.9
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.9e-14 83.6 189 34.9
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 3.2e-14 82.8 203 41.9
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 4.2e-14 82.4 165 41.2
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 7.2e-14 81.6 173 38.7
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 3.6e-13 79.3 102 48.0
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 6.1e-13 78.6 175 36.6
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 2.3e-12 76.6 170 38.8
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 8.8e-12 74.7 125 44.0
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 1.2e-11 74.3 52 73.1
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.2e-11 74.3 131 44.3
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 2.0e-11 73.6 161 39.1
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.0e-11 73.6 161 39.1
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 7.5e-11 71.6 150 33.3
C09p05140 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-10 70.9 49 81.6
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 6.3e-10 68.6 102 49.0
CARHR150300 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.8e-09 67.0 74 52.7
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 3.1e-09 66.2 83 48.2
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 7.0e-09 65.1 81 40.7
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.7e-08 61.6 57 59.6
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.9e-07 59.7 62 53.2
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 6.6e-07 58.5 171 39.8
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 6.6e-07 58.5 40 57.5
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 4.3e-06 55.8 102 44.1
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.3e-06 55.8 92 37.0
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.3e-06 55.8 92 37.0


User provided reference genes

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