Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g34110 Brassica carinata HOM05D006208 ORTHO05D007606 8.9e-137 490.3 260 100.0
BcaC05g24798 Brassica carinata HOM05D006208 ORTHO05D007606 2.0e-120 436.0 263 89.0
BraA06t23774Z Brassica rapa HOM05D000200 ORTHO05D000262 3.2e-110 402.1 241 89.2
A06p05650 Brassica napus HOM05D000200 ORTHO05D000262 7.1e-110 401.0 241 88.8
Sp1g07360 Schrenkiella parvula HOM05D006208 ORTHO05D007606 1.9e-102 376.3 263 79.5
CARHR008630 Cardamine hirsuta HOM05D006208 ORTHO05D007606 1.3e-100 370.2 249 80.3
AT1G08710 Arabidopsis thaliana HOM05D006208 ORTHO05D007606 1.6e-98 363.2 242 81.0
AL1G19150 Arabidopsis lyrata HOM05D006208 ORTHO05D007606 2.1e-98 362.8 278 71.6
Carub.0001s0806 Capsella rubella HOM05D006208 ORTHO05D007606 1.8e-97 359.8 279 73.5
Thhalv10008513m.g Eutrema salsugineum HOM05D006208 ORTHO05D007606 4.0e-97 358.6 267 75.3
Aa31sc449G40 Aethionema arabicum HOM05D006208 ORTHO05D007606 3.5e-85 318.9 263 66.2
THA.LOC104798848 Tarenaya hassleriana HOM05D006208 ORTHO05D007606 4.3e-75 285.4 243 63.0
Thecc.05G239100 Theobroma cacao HOM05D006208 ORTHO05D007606 5.3e-73 278.5 242 63.6
Duzib177G0527 Durio zibethinus HOM05D006208 ORTHO05D007606 1.6e-69 266.9 239 61.5
Manes.08G150900 Manihot esculenta HOM05D006208 ORTHO05D007606 2.3e-68 263.1 239 60.7
Potri.013G067600 Populus trichocarpa HOM05D006208 ORTHO05D007606 5.7e-67 258.5 239 57.3
TWI34G1475 Tripterygium wilfordii HOM05D006208 ORTHO05D007606 1.7e-66 256.9 234 60.7
Gohir.D13G101700 Gossypium hirsutum HOM05D006208 ORTHO05D007606 3.7e-66 255.8 214 63.6
MD12G1014000 Malus domestica HOM05D006208 ORTHO05D007606 6.3e-66 255.0 232 59.5
Gorai.013G113800 Gossypium raimondii HOM05D006208 ORTHO05D007606 8.2e-66 254.6 214 63.1
COL.COLO4_08902 Corchorus olitorius HOM05D006208 ORTHO05D007606 5.3e-65 251.9 238 60.1
Ciclev10032470m.g Citrus clementina HOM05D006208 ORTHO05D007606 9.1e-65 251.1 238 58.4
Gohir.A13G096300 Gossypium hirsutum HOM05D006208 ORTHO05D007606 1.2e-64 250.8 214 62.6
QL07p016540 Quercus lobata HOM05D006208 ORTHO05D007606 1.2e-64 250.8 232 58.6
GSVIVG01029918001 Vitis vinifera HOM05D006208 ORTHO05D007606 3.4e-64 249.2 250 56.0
Glyma.19G119400 Glycine max HOM05D006208 ORTHO05D007606 2.2e-63 246.5 232 56.9
VMungo1383G1214 Vigna mungo HOM05D006208 ORTHO05D007606 2.9e-63 246.1 231 57.6
Sabra13G0059000 Salix brachista HOM05D006208 ORTHO05D007606 3.8e-63 245.7 236 55.9
Ca_03440_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 9.4e-62 241.1 234 57.7
Ca_08778_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 9.4e-62 241.1 234 57.7
Cfa019872 Carpinus fangiana HOM05D006208 ORTHO05D007606 1.4e-60 237.3 214 59.8
Nitab4.5_0015172g0010 Nicotiana tabacum HOM05D006208 ORTHO05D007606 1.1e-59 234.2 242 52.1
RcHm_v2.0_Chr3g0495701 Rosa chinensis HOM05D006208 ORTHO05D007606 3.3e-59 232.6 240 52.9
CiPaw.09G165300 Carya illinoinensis HOM05D006208 ORTHO05D007606 5.7e-59 231.9 232 55.6
C05p06800 Brassica napus HOM05D006208 ORTHO05D007606 7.4e-59 231.5 139 85.6
Lalb_Chr22g0358421 Lupinus albus HOM05D006208 ORTHO05D007606 7.4e-59 231.5 232 53.4
Sopen10g035070 Solanum pennellii HOM05D006208 ORTHO05D007606 7.4e-59 231.5 241 53.5
Dinv14560 Davidia involucrata HOM05D006208 ORTHO05D007606 1.3e-58 230.7 243 53.5
Nitab4.5_0000381g0210 Nicotiana tabacum HOM05D006208 ORTHO05D007606 1.7e-58 230.3 239 53.6
vmacro07634 Vaccinium macrocarpon HOM05D006208 ORTHO05D007606 2.2e-58 229.9 254 50.8
MELO3C019160.2 Cucumis melo HOM05D006208 ORTHO05D007606 2.8e-58 229.6 238 52.5
BolC5t29439H Brassica oleracea HOM05D006208 ORTHO05D007606 3.7e-58 229.2 139 84.9
FAN13G0695 Fragaria x ananassa HOM05D006208 ORTHO05D007606 6.3e-58 228.4 238 55.5
unitig_0.g581 Utricularia gibba HOM05D006208 ORTHO05D007606 8.2e-58 228.0 214 57.5
CANSAT78G0878 Cannabis sativa HOM05D006208 ORTHO05D007606 1.1e-57 227.6 238 52.9
Medtr7g087140 Medicago truncatula HOM05D006208 ORTHO05D007606 1.4e-57 227.3 236 54.2
AUR62036506 Chenopodium quinoa HOM05D006208 ORTHO05D007606 2.4e-57 226.5 244 52.9
Hma1.2p1_1127F.1_g259670 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 2.4e-57 226.5 241 53.9
Lj1g0003173 Lotus japonicus HOM05D006208 ORTHO05D007606 2.4e-57 226.5 233 54.1
Solyc10g085660.3 Solanum lycopersicum HOM05D006208 ORTHO05D007606 3.1e-57 226.1 242 52.1
EL10As12g24012 Beta vulgaris HOM05D006208 ORTHO05D007606 9.1e-57 224.6 241 53.9
FvH4_5g39040 Fragaria vesca HOM05D006208 ORTHO05D007606 9.1e-57 224.6 239 54.0
PGSC0003DMG400008402 Solanum tuberosum HOM05D006208 ORTHO05D007606 1.2e-56 224.2 242 52.1
FAN18G4346 Fragaria x ananassa HOM05D006208 ORTHO05D007606 1.5e-56 223.8 239 54.8
CAN.G1018.11 Capsicum annuum HOM05D006208 ORTHO05D007606 2.6e-56 223.0 245 49.4
Migut.B00931 Erythranthe guttata HOM05D006208 ORTHO05D007606 2.6e-56 223.0 213 54.5
FAN04G2426 Fragaria x ananassa HOM05D006208 ORTHO05D007606 2.6e-56 223.0 238 53.4
Eucgr.K01547 Eucalyptus grandis HOM05D006208 ORTHO05D007606 7.7e-56 221.5 241 52.3
Nn8g39480 Nelumbo nucifera HOM05D006208 ORTHO05D007606 1.3e-55 220.7 233 51.5
Lj1A1159G88 Lonicera japonica HOM05D006208 ORTHO05D007606 6.5e-55 218.4 244 51.6
Phvul.001G107700 Phaseolus vulgaris HOM05D006208 ORTHO05D007606 8.5e-55 218.0 184 62.5
Atru.chr2.1570 Acer truncatum HOM05D006208 ORTHO05D007606 1.1e-54 217.6 241 53.9
SGA_v2.0_scaffold66G22407 Striga asiatica HOM05D006208 ORTHO05D007606 4.2e-54 215.7 225 50.2
Peaxi162Scf00146g00097 Petunia axillaris HOM05D006208 ORTHO05D007606 2.7e-53 213.0 241 47.7
arahy.Tifrunner.gnm1.ann1.71CHM8 Arachis hypogaea HOM05D006208 ORTHO05D007606 4.7e-53 212.2 232 51.7
Hma1.2p1_0776F.1_g216610 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 7.9e-53 211.5 220 55.5
FvH4_3g02594 Fragaria vesca HOM05D006208 ORTHO05D007606 1.0e-52 211.1 234 52.1
Psat3g085200 Pisum sativum HOM05D006208 ORTHO05D007606 1.8e-52 210.3 187 61.0
SalBow6G5221 Salvia bowleyana HOM05D006208 ORTHO05D007606 2.3e-52 209.9 228 49.6
Hund10725 Selenicereus undatus HOM05D006208 ORTHO05D007606 6.7e-52 208.4 244 50.8
Aqoxy6G01592 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 1.5e-51 207.2 238 48.3
MSTRG.19726 Avicennia marina HOM05D006208 ORTHO05D007606 2.6e-51 206.5 238 48.7
ClCG04G006060 Citrullus lanatus HOM05D006208 ORTHO05D007606 9.7e-51 204.5 289 43.6
Cc03_g15330 Coffea canephora HOM05D006208 ORTHO05D007606 9.7e-51 204.5 247 48.2
Haze_20379 Corylus avellana HOM05D006208 ORTHO05D007606 4.8e-50 202.2 232 50.4
ECA232G0512 Erigeron canadensis HOM05D006208 ORTHO05D007606 1.2e-48 197.6 236 45.8
MBI19_g04334_MAGBIO Magnolia biondii HOM05D006208 ORTHO05D007606 2.6e-48 196.4 230 46.5
arahy.Tifrunner.gnm1.ann1.2NMK5X Arachis hypogaea HOM05D006208 ORTHO05D007606 5.0e-47 192.2 184 55.4
DCAR_020701 Daucus carota HOM05D006208 ORTHO05D007606 1.5e-46 190.7 239 47.3
Peaxi162Scf00146g00107 Petunia axillaris HOM05D006208 ORTHO05D007606 3.2e-46 189.5 212 46.7
Peaxi162Scf62544g00003 Petunia axillaris HOM05D006208 ORTHO05D007606 3.2e-46 189.5 212 46.7
Ah.12g062010 Amaranthus hybridus HOM05D006208 ORTHO05D007606 9.4e-46 188.0 202 53.0
CsaV3_4G029050 Cucumis sativus L. HOM05D006208 ORTHO05D007606 1.2e-45 187.6 177 58.2
HPP92_022884 Vanilla planifolia HOM05D006208 ORTHO05D007606 4.0e-44 182.6 214 49.5
ATR0068G109 Amborella trichopoda HOM05D006208 ORTHO05D007606 1.7e-42 177.2 232 42.7
Sed0009124 Sechium edule HOM05D006208 ORTHO05D007606 2.8e-42 176.4 215 47.4
HanXRQChr09g0255371 Helianthus annuus HOM05D006208 ORTHO05D007606 4.5e-40 169.1 185 51.9
Zm00001eb149890 Zea mays HOM05D006208 ORTHO05D007606 8.5e-39 164.9 187 49.2
Os01g0814700 Oryza sativa ssp. japonica HOM05D006208 ORTHO05D007606 3.2e-38 162.9 189 48.7
Lsat_1_v5_gn_4_159701 Lactuca sativa HOM05D006208 ORTHO05D007606 2.7e-37 159.8 205 46.3
Cpa.g.sc73.15 Carica papaya HOM05D006208 ORTHO05D007606 4.7e-37 159.1 160 51.9
TAR636G0902 Trochodendron aralioides HOM05D006208 ORTHO05D007606 4.4e-35 152.5 164 51.8
C05p06810 Brassica napus HOM05D000200 ORTHO05D000262 3.1e-33 146.4 83 94.0
BolC5t29440H Brassica oleracea HOM05D000200 ORTHO05D000262 3.1e-33 146.4 83 94.0
SEGI_27241 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 5.4e-33 145.6 210 40.0
CDE09G0594 Ceratophyllum demersum HOM05D002946 ORTHO05D007606 8.6e-31 138.3 181 45.9
Prupe.7G018500 Prunus persica HOM05D006208 ORTHO05D007606 8.6e-31 138.3 139 54.0
TPR.G7831 Trifolium pratense HOM05D006208 ORTHO05D007606 2.6e-27 126.7 144 50.0
Rhsim03G0045600 Rhododendron simsii HOM05D006208 ORTHO05D007606 3.7e-26 122.9 155 46.5
AUR62037069 Chenopodium quinoa HOM05D006208 ORTHO05D007606 1.2e-24 117.9 117 56.4
Pp3c18_14450 Physcomitrium patens HOM05D006208 ORTHO05D007606 2.0e-24 117.1 222 30.2
Sc22g0000860 Simmondsia chinensis HOM05D006208 ORTHO05D007606 1.7e-23 114.0 100 60.0
TPR.G35926 Trifolium pratense HOM05D006208 ORTHO05D007606 3.8e-23 112.8 100 62.0
Rhsim03G0045700 Rhododendron simsii HOM05D006208 ORTHO05D007606 5.6e-22 109.0 99 57.6
FAN08G0500 Fragaria x ananassa HOM05D006208 ORTHO05D007606 2.1e-21 107.1 93 61.3
SHI14855 Sapria himalayana HOM05D000023 ORTHO05D000014 2.8e-21 106.7 176 42.6
CBR_g36542 Chara braunii HOM05D006208 ORTHO05D007606 1.4e-20 104.4 263 31.2
SMO351G0165 Selaginella moellendorffii HOM05D006208 ORTHO05D007606 1.2e-19 101.3 222 30.6
VMungo1383G2538 Vigna mungo HOM05D006208 ORTHO05D007606 1.2e-19 101.3 148 42.6
FAN21G1425 Fragaria x ananassa HOM05D006208 ORTHO05D007606 7.0e-17 92.0 85 57.6
AL5G15230 Arabidopsis lyrata HOM05D001124 ORTHO05D007606 2.7e-16 90.1 65 73.8
Medtr7g087170 Medicago truncatula HOM05D006208 ORTHO05D007606 2.7e-16 90.1 83 56.6
TPR.G15311 Trifolium pratense HOM05D006208 ORTHO05D007606 8.6e-15 85.1 85 56.5
Sc22g0000880 Simmondsia chinensis HOM05D006208 ORTHO05D007606 1.2e-13 81.3 79 53.2
C03p16190 Brassica napus HOM05D026471 ORTHO05D027980 2.3e-12 77.0 49 85.7
C03p30130 Brassica napus HOM05D026471 ORTHO05D027980 2.3e-12 77.0 49 85.7
Peaxi162Scf00146g00108 Petunia axillaris HOM05D006208 ORTHO05D007606 6.8e-12 75.5 66 51.5
SHI14857 Sapria himalayana HOM05D006208 ORTHO05D007606 6.8e-12 75.5 81 51.9
Aqoxy3G03625 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 2.0e-11 73.9 67 50.7
Mapoly0047s0023 Marchantia polymorpha HOM05D006208 ORTHO05D007606 2.6e-11 73.6 217 26.7
AagrBONN_evm.TU.Sc2ySwM_117.1480 Anthoceros agrestis HOM05D006208 ORTHO05D007606 9.8e-11 71.6 145 30.3
Medtr7g087330 Medicago truncatula HOM05D006208 ORTHO05D007606 9.8e-11 71.6 99 45.5
SalBow5G5293 Salvia bowleyana HOM05D000001 ORTHO05D009952 1.9e-09 67.4 153 32.7
Oeu054958.1 Olea europaea HOM05D006208 ORTHO05D007606 2.4e-09 67.0 80 47.5
Oeu029768.1 Olea europaea HOM05D006208 ORTHO05D007606 3.2e-09 66.6 78 42.3
Aqoxy3G03662 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 9.2e-09 65.1 182 26.9
TPR.G7822 Trifolium pratense HOM05D006208 ORTHO05D007606 9.2e-09 65.1 196 33.7
Oeu029769.2 Olea europaea HOM05D006208 ORTHO05D007606 2.7e-08 63.5 63 46.0
Oeu032547.1 Olea europaea HOM05D006208 ORTHO05D007606 8.6e-07 58.5 53 47.2
SEGI_30866 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 1.1e-06 58.2 96 37.5
arahy.Tifrunner.gnm1.ann1.Q1DBZB Arachis hypogaea HOM05D006208 ORTHO05D007606 2.5e-06 57.0 61 45.9


User provided reference genes

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