Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33882 Brassica carinata HOM05D003418 ORTHO05D004105 2.9e-112 408.7 220 100.0
BcaB06g27003 Brassica carinata HOM05D003418 ORTHO05D004105 9.1e-58 227.6 140 91.4
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 2.0e-17 93.6 65 86.2
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 7.8e-17 91.7 74 77.0
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 7.8e-17 91.7 74 77.0
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 3.9e-16 89.4 67 82.1
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 3.9e-16 89.4 67 82.1
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 8.0e-14 81.6 77 64.9
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 1.0e-13 81.3 65 75.4
A02p43290 Brassica napus HOM05D000160 ORTHO05D001344 1.4e-13 80.9 70 67.1
BraA02t09254Z Brassica rapa HOM05D000160 ORTHO05D001344 1.4e-13 80.9 70 67.1
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 3.1e-13 79.7 64 73.4
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 4.0e-13 79.3 63 76.2
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 5.2e-13 79.0 66 71.2
BcaB07g29740 Brassica carinata HOM05D000160 ORTHO05D001344 8.9e-13 78.2 78 61.5
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 8.9e-13 78.2 64 73.4
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 1.5e-12 77.4 63 74.6
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 1.5e-12 77.4 62 74.2
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 2.0e-12 77.0 63 74.6
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 2.0e-12 77.0 66 62.1
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 5.8e-12 75.5 64 70.3
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 7.5e-12 75.1 57 73.7
C03p61920 Brassica napus HOM05D000160 ORTHO05D001344 7.5e-12 75.1 59 72.9
BolC3t18451H Brassica oleracea HOM05D000160 ORTHO05D001344 7.5e-12 75.1 59 72.9
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 7.5e-12 75.1 54 75.9
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 7.5e-12 75.1 65 63.1
BcaC01g06915 Brassica carinata HOM05D000160 ORTHO05D001344 9.8e-12 74.7 59 72.9
BcaC01g06916 Brassica carinata HOM05D000160 ORTHO05D001344 9.8e-12 74.7 59 72.9
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.3e-11 74.3 62 64.5
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.3e-11 74.3 62 69.4
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.3e-11 74.3 62 69.4
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.3e-11 74.3 62 69.4
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.3e-11 74.3 62 72.6
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 1.7e-11 73.9 63 69.8
BraA06t26046Z Brassica rapa HOM05D000160 ORTHO05D001344 1.7e-11 73.9 59 72.9
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.7e-11 73.9 91 52.7
A06p31040 Brassica napus HOM05D000160 ORTHO05D001344 2.9e-11 73.2 59 72.9
Carub.0008s2516 Capsella rubella HOM05D000160 ORTHO05D001344 2.9e-11 73.2 57 73.7
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 3.7e-11 72.8 79 59.5
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 4.9e-11 72.4 53 79.2
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 4.9e-11 72.4 62 71.0
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 4.9e-11 72.4 62 71.0
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 4.9e-11 72.4 62 71.0
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 6.4e-11 72.0 64 64.1
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 8.3e-11 71.6 62 64.5
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 1.1e-10 71.2 62 67.7
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 1.1e-10 71.2 62 66.1
Sp2g27450 Schrenkiella parvula HOM05D000160 ORTHO05D001344 1.4e-10 70.9 58 72.4
AL8G41720 Arabidopsis lyrata HOM05D000160 ORTHO05D001344 2.4e-10 70.1 57 71.9
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.4e-10 70.1 64 60.9
Thhalv10004095m.g Eutrema salsugineum HOM05D000160 ORTHO05D001344 3.2e-10 69.7 58 70.7
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 3.2e-10 69.7 62 62.9
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 4.1e-10 69.3 62 64.5
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 4.1e-10 69.3 62 62.9
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 5.4e-10 68.9 65 60.0
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 5.4e-10 68.9 62 64.5
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 5.4e-10 68.9 64 62.5
BcaC03g18259 Brassica carinata HOM05D000160 ORTHO05D001344 7.0e-10 68.6 43 81.4
C02p63320 Brassica napus HOM05D000160 ORTHO05D001344 7.0e-10 68.6 43 81.4
BolC2t12402H Brassica oleracea HOM05D000160 ORTHO05D001344 7.0e-10 68.6 43 81.4
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 7.0e-10 68.6 62 61.3
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 1.2e-09 67.8 62 64.5
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.6e-09 67.4 64 60.9
AT5G64360 Arabidopsis thaliana HOM05D000160 ORTHO05D001344 2.0e-09 67.0 57 70.2
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 2.0e-09 67.0 54 64.8
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 2.7e-09 66.6 64 57.8
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.7e-09 66.6 54 66.7
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 2.7e-09 66.6 54 66.7
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 2.7e-09 66.6 62 62.9
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 2.7e-09 66.6 71 57.7
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 3.5e-09 66.2 54 66.7
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 3.5e-09 66.2 62 61.3
CARHR278300 Cardamine hirsuta HOM05D000160 ORTHO05D001344 4.6e-09 65.9 58 65.5
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 6.0e-09 65.5 64 57.8
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 6.0e-09 65.5 62 58.1
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 6.0e-09 65.5 62 62.9
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 6.0e-09 65.5 65 58.5
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 6.0e-09 65.5 62 58.1
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 6.0e-09 65.5 62 64.5
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 1.0e-08 64.7 65 60.0
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 1.0e-08 64.7 62 59.7
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.0e-08 64.7 63 58.7
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 1.0e-08 64.7 62 62.9
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 1.3e-08 64.3 63 61.9
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 1.3e-08 64.3 67 55.2
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.7e-08 63.9 62 61.3
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.7e-08 63.9 63 57.1
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 1.7e-08 63.9 64 59.4
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 1.7e-08 63.9 58 65.5
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 2.3e-08 63.5 64 60.9
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 2.3e-08 63.5 62 61.3
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 2.3e-08 63.5 62 58.1
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 3.0e-08 63.2 62 59.7
Aa31LG1G17540 Aethionema arabicum HOM05D000160 ORTHO05D001344 5.0e-08 62.4 58 63.8
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 5.0e-08 62.4 62 62.9
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 6.6e-08 62.0 53 67.9
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 6.6e-08 62.0 76 47.4
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 6.6e-08 62.0 64 53.1
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 6.6e-08 62.0 63 57.1
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 1.1e-07 61.2 62 54.8
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 1.1e-07 61.2 64 56.2
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.1e-07 61.2 63 57.1
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.1e-07 61.2 63 57.1
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.1e-07 61.2 54 61.1
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 1.5e-07 60.8 62 58.1
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 1.5e-07 60.8 62 56.5
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.5e-07 60.8 66 56.1
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 1.9e-07 60.5 63 58.7
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 1.9e-07 60.5 62 54.8
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 1.9e-07 60.5 64 53.1
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 1.9e-07 60.5 62 56.5
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 1.9e-07 60.5 49 69.4
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 2.5e-07 60.1 62 59.7
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 3.3e-07 59.7 62 58.1
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 3.3e-07 59.7 62 58.1
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 3.3e-07 59.7 67 56.7
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 3.3e-07 59.7 71 46.5
THA.LOC104819327 Tarenaya hassleriana HOM05D000160 ORTHO05D001344 3.3e-07 59.7 71 52.1
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 4.3e-07 59.3 61 57.4
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 4.3e-07 59.3 49 65.3
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 4.3e-07 59.3 49 65.3
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 4.3e-07 59.3 49 67.3
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 4.3e-07 59.3 71 47.9
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 5.6e-07 58.9 55 60.0
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 5.6e-07 58.9 47 68.1
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 7.3e-07 58.5 63 57.1
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 9.5e-07 58.2 55 54.5
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 9.5e-07 58.2 65 55.4
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.2e-06 57.8 61 55.7
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 1.2e-06 57.8 62 51.6
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 1.6e-06 57.4 53 58.5
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 1.6e-06 57.4 46 65.2
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 1.6e-06 57.4 73 43.8
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 1.6e-06 57.4 67 56.7
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 1.6e-06 57.4 66 54.5
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 2.1e-06 57.0 65 53.8
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 2.1e-06 57.0 46 65.2
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 2.8e-06 56.6 53 54.7
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 2.8e-06 56.6 61 55.7
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 2.8e-06 56.6 62 54.8
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 3.6e-06 56.2 60 51.7
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 3.6e-06 56.2 46 63.0
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 4.7e-06 55.8 70 50.0
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 4.7e-06 55.8 62 53.2
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 6.2e-06 55.5 70 45.7
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 8.1e-06 55.1 59 52.5
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 8.1e-06 55.1 62 51.6
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 8.1e-06 55.1 55 54.5
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 8.1e-06 55.1 64 51.6


User provided reference genes

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