Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-127 459.9 239 100.0
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.0e-114 416.0 240 92.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.0e-114 416.0 240 92.5
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 7.4e-114 414.1 240 92.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 8.5e-110 400.6 239 87.4
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 8.5e-110 400.6 239 87.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.4e-107 393.3 239 85.8
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-107 392.9 239 86.2
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.5e-106 389.8 241 85.9
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 2.6e-106 389.0 241 85.5
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 3.3e-106 388.7 240 86.2
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 5.7e-106 387.9 241 85.5
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 5.7e-106 387.9 241 85.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.1e-104 381.7 240 83.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 7.7e-103 377.5 221 91.9
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 5.2e-99 364.8 240 81.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.8e-89 331.6 258 70.5
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.7e-86 323.2 240 73.8
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.8e-86 322.0 240 72.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 7.2e-85 317.8 215 76.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.0e-83 313.9 178 88.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 6.8e-83 311.2 185 84.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 7.5e-74 281.2 243 61.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.4e-72 276.9 244 62.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.2e-71 273.9 247 60.7
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.6e-71 273.5 246 61.0
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.0e-71 273.1 242 62.0
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.7e-71 272.7 242 61.6
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.7e-71 272.7 244 60.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.5e-71 272.3 246 62.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.5e-71 272.3 241 62.2
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.6e-71 271.9 242 61.6
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 6.0e-71 271.6 243 60.1
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.8e-71 271.2 244 59.8
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.8e-71 271.2 241 62.2
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.7e-70 270.0 242 59.5
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.7e-70 270.0 239 59.0
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.0e-70 269.2 247 60.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.9e-70 268.9 236 58.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 3.9e-70 268.9 241 58.5
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 5.0e-70 268.5 244 61.9
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 6.6e-70 268.1 243 59.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 8.6e-70 267.7 248 58.5
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 8.6e-70 267.7 242 61.2
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.6e-70 267.7 241 60.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.1e-69 267.3 241 61.0
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.5e-69 266.9 244 59.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.5e-69 266.9 196 67.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.9e-69 266.5 244 60.2
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 7.3e-69 264.6 249 59.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 7.3e-69 264.6 239 61.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.2e-68 263.8 232 61.2
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-68 263.5 202 65.3
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-68 262.7 242 58.3
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.8e-68 262.7 244 58.6
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.6e-68 262.3 227 60.4
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.7e-68 261.9 241 58.9
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.7e-68 261.9 239 60.3
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 6.2e-68 261.5 239 57.7
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.2e-68 261.5 238 60.5
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.2e-68 261.5 239 61.1
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.0e-68 261.2 221 61.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.0e-68 261.2 239 60.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 8.0e-68 261.2 244 58.6
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.4e-67 260.4 243 58.4
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.4e-67 260.4 243 58.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.4e-67 260.4 244 59.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.4e-67 260.4 244 59.4
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.8e-67 260.0 239 59.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.3e-67 259.6 238 59.2
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.3e-67 259.6 241 58.1
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.1e-67 259.2 179 69.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 8.9e-67 257.7 243 58.8
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.2e-66 257.3 241 61.0
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.2e-66 257.3 240 57.5
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.5e-66 256.9 241 56.4
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.6e-66 256.1 237 58.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 5.8e-66 255.0 185 66.5
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.3e-65 253.8 237 58.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-65 253.8 240 55.4
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.3e-65 253.8 241 55.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-65 253.1 178 70.2
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.2e-65 253.1 185 65.9
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.4e-65 251.5 239 58.6
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 8.3e-65 251.1 239 56.1
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.4e-64 250.4 239 57.3
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 2.4e-64 249.6 239 57.7
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.2e-64 249.2 178 69.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 7.0e-64 248.1 178 69.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 9.2e-64 247.7 238 55.9
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-63 247.3 178 68.5
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.6e-63 246.9 250 55.2
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.6e-63 246.9 163 79.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.6e-63 246.9 244 55.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.5e-63 245.7 238 53.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.6e-63 245.4 241 54.8
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.0e-63 245.0 240 55.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.0e-62 244.2 176 68.2
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.0e-62 244.2 241 54.8
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-62 243.8 239 54.4
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.3e-62 243.8 185 66.5
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.7e-62 243.4 225 56.4
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.7e-62 243.4 239 55.6
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.7e-62 243.4 151 78.8
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.0e-62 242.7 178 66.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.0e-62 241.9 252 53.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 5.0e-62 241.9 252 56.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.1e-61 240.7 215 60.9
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.9e-61 240.0 243 56.4
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.3e-61 239.2 175 67.4
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.3e-61 239.2 246 54.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.6e-61 238.4 239 54.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 7.3e-61 238.0 245 56.3
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.2e-60 237.3 252 52.0
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.6e-60 236.9 245 53.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.1e-60 236.5 203 60.1
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.1e-59 234.2 243 55.1
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.8e-59 233.4 175 65.1
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.8e-59 233.4 220 57.7
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.3e-59 233.0 245 53.5
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.5e-58 230.3 163 69.3
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.5e-58 230.3 239 53.1
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.0e-58 229.9 167 66.5
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 4.9e-57 225.3 232 53.4
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.3e-57 224.6 158 69.0
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 7.1e-56 221.5 246 51.6
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 7.1e-56 221.5 200 56.0
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-55 219.5 163 65.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.6e-55 218.8 206 54.4
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-54 216.1 147 71.4
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 3.9e-54 215.7 238 52.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.1e-54 215.3 230 56.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 6.6e-54 214.9 173 62.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 8.6e-54 214.5 172 61.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.1e-53 214.2 172 61.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.2e-52 210.7 207 53.1
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.1e-51 206.1 175 59.4
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 5.8e-50 201.8 241 48.1
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.8e-49 199.1 178 60.1
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-47 194.1 226 53.5
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-43 180.6 132 64.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-38 164.1 147 59.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.3e-38 164.1 173 47.4
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 8.7e-38 161.4 112 67.9
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.2e-33 146.7 173 43.4
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 3.8e-33 146.0 106 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 3.5e-31 139.4 178 42.1
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 3.9e-30 136.0 165 48.5
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 3.1e-27 126.3 151 42.4
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.5e-26 124.0 161 42.2
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-21 107.8 76 67.1
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 7.6e-18 95.1 86 57.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 4.2e-16 89.4 154 34.4
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.0e-14 84.7 71 62.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.0e-14 84.7 71 62.0
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.5e-13 80.9 59 71.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.5e-13 80.9 74 50.0
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.8e-11 73.9 103 43.7
Aa31sc213G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.1e-06 55.8 55 63.6


User provided reference genes

Program Settings