Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33789 Brassica carinata HOM05D000412 ORTHO05D000429 1.3e-89 333.2 186 100.0
C06p02520 Brassica napus HOM05D000412 ORTHO05D000429 1.4e-72 276.6 197 82.7
BolC6t35380H Brassica oleracea HOM05D000412 ORTHO05D000429 1.4e-72 276.6 197 82.7
A06p04690 Brassica napus HOM05D000412 ORTHO05D000429 5.1e-70 268.1 192 78.1
BraA06t23672Z Brassica rapa HOM05D000412 ORTHO05D000429 1.1e-69 266.9 192 77.6
Thhalv10011308m.g Eutrema salsugineum HOM05D000412 ORTHO05D000429 1.7e-60 236.5 196 65.8
Sp1g35070 Schrenkiella parvula HOM05D000412 ORTHO05D000429 2.0e-58 229.6 196 66.8
CARHR037750 Cardamine hirsuta HOM05D000412 ORTHO05D000429 4.7e-55 218.4 196 63.3
AL1G54680 Arabidopsis lyrata HOM05D000412 ORTHO05D000429 6.1e-55 218.0 197 64.0
Carub.0001s3721 Capsella rubella HOM05D000412 ORTHO05D000429 2.2e-52 209.5 197 62.9
AT1G48110 Arabidopsis thaliana HOM05D000412 ORTHO05D000429 5.5e-48 194.9 197 58.9
Aa31LG8G4240 Aethionema arabicum HOM05D000412 ORTHO05D000429 3.6e-31 139.0 188 50.5
Carub.0003s1704 Capsella rubella HOM05D000412 ORTHO05D000429 1.5e-29 133.7 200 48.0
AL3G30380 Arabidopsis lyrata HOM05D000412 ORTHO05D000429 1.1e-27 127.5 201 47.8
CARHR092640 Cardamine hirsuta HOM05D000412 ORTHO05D000429 5.4e-27 125.2 195 44.6
AT3G17330 Arabidopsis thaliana HOM05D000412 ORTHO05D000429 2.0e-26 123.2 194 46.9
THA.LOC104802611 Tarenaya hassleriana HOM05D000412 ORTHO05D000429 5.9e-26 121.7 195 41.0
Gohir.D01G023589 Gossypium hirsutum HOM05D000412 ORTHO05D000429 2.7e-18 96.3 197 37.6
Gorai.002G031800 Gossypium raimondii HOM05D000412 ORTHO05D000429 2.7e-18 96.3 197 37.6
COL.COLO4_34536 Corchorus olitorius HOM05D000412 ORTHO05D000429 1.0e-17 94.4 200 34.5
PGR004G2647 Punica granatum HOM05D000412 ORTHO05D000429 1.7e-17 93.6 211 32.7
RcHm_v2.0_Chr4g0426561 Rosa chinensis HOM05D000412 ORTHO05D000429 5.0e-17 92.0 217 33.2
Thecc.04G309200 Theobroma cacao HOM05D000412 ORTHO05D000429 8.6e-17 91.3 200 34.0
FvH4_4g21030 Fragaria vesca HOM05D000412 ORTHO05D000429 3.3e-16 89.4 217 33.2
Manes.15G003300 Manihot esculenta HOM05D000412 ORTHO05D000429 3.3e-16 89.4 197 34.0
CiPaw.02G071400 Carya illinoinensis HOM05D000412 ORTHO05D000429 4.3e-16 89.0 191 35.1
FAN12G1214 Fragaria x ananassa HOM05D000412 ORTHO05D000429 4.3e-16 89.0 217 33.2
Oeu014217.2 Olea europaea HOM05D000412 ORTHO05D000429 7.3e-16 88.2 195 36.9
MD13G1146000 Malus domestica HOM05D000412 ORTHO05D000429 1.6e-15 87.0 202 36.6
CAN.G484.80 Capsicum annuum HOM05D000412 ORTHO05D000429 2.1e-15 86.7 214 31.8
Oeu012203.1 Olea europaea HOM05D000412 ORTHO05D000429 2.1e-15 86.7 203 34.0
Prupe.1G109700 Prunus persica HOM05D000412 ORTHO05D000429 2.1e-15 86.7 204 36.3
Cpa.g.sc146.48 Carica papaya HOM05D000412 ORTHO05D000429 2.8e-15 86.3 207 32.9
Cfa015707 Carpinus fangiana HOM05D000412 ORTHO05D000429 3.6e-15 85.9 217 34.1
Hund12241 Selenicereus undatus HOM05D000412 ORTHO05D000429 3.6e-15 85.9 202 32.7
Gorai.005G070500 Gossypium raimondii HOM05D000412 ORTHO05D000429 8.0e-15 84.7 199 33.2
HanXRQChr05g0145831 Helianthus annuus HOM05D000412 ORTHO05D000429 8.0e-15 84.7 199 34.7
Peaxi162Scf01194g00132 Petunia axillaris HOM05D000412 ORTHO05D000429 8.0e-15 84.7 193 35.2
SalBow8G1211 Salvia bowleyana HOM05D000412 ORTHO05D000429 8.0e-15 84.7 206 33.5
AUR62002582 Chenopodium quinoa HOM05D000412 ORTHO05D000429 1.0e-14 84.3 186 36.6
Lj3C838G11 Lonicera japonica HOM05D000412 ORTHO05D000429 1.8e-14 83.6 196 31.6
Peaxi162Scf00126g01316 Petunia axillaris HOM05D000412 ORTHO05D000429 1.8e-14 83.6 216 34.3
PGSC0003DMG400004607 Solanum tuberosum HOM05D000412 ORTHO05D000429 1.8e-14 83.6 197 34.5
Glyma.17G038400 Glycine max HOM05D000412 ORTHO05D000429 2.3e-14 83.2 191 33.5
Gohir.A01G036000 Gossypium hirsutum HOM05D000412 ORTHO05D000429 2.3e-14 83.2 188 34.6
Gohir.D02G062600 Gossypium hirsutum HOM05D000412 ORTHO05D000429 2.3e-14 83.2 199 32.7
Nitab4.5_0002474g0020 Nicotiana tabacum HOM05D000412 ORTHO05D000429 3.1e-14 82.8 201 34.3
QL06p013654 Quercus lobata HOM05D000412 ORTHO05D000429 4.0e-14 82.4 168 36.9
vmacro15160 Vaccinium macrocarpon HOM05D000412 ORTHO05D000429 4.0e-14 82.4 196 35.2
Potri.010G152300 Populus trichocarpa HOM05D000412 ORTHO05D000429 5.2e-14 82.0 233 33.5
Rhsim02G0000800 Rhododendron simsii HOM05D000412 ORTHO05D000429 5.2e-14 82.0 216 33.3
Sabra10G0117200 Salix brachista HOM05D001482 ORTHO05D000429 5.2e-14 82.0 225 31.1
AUR62030004 Chenopodium quinoa HOM05D000412 ORTHO05D000429 6.8e-14 81.6 187 39.0
Glyma.07G233400 Glycine max HOM05D000412 ORTHO05D000429 6.8e-14 81.6 191 32.5
MD16G1140100 Malus domestica HOM05D000412 ORTHO05D000429 6.8e-14 81.6 192 32.8
Atru.chr4.3118 Acer truncatum HOM05D000412 ORTHO05D000429 8.9e-14 81.3 198 33.8
Lalb_Chr15g0089011 Lupinus albus HOM05D000412 ORTHO05D000429 8.9e-14 81.3 195 33.3
Dinv29540 Davidia involucrata HOM05D000412 ORTHO05D000429 1.2e-13 80.9 217 34.6
Phvul.006G121600 Phaseolus vulgaris HOM05D000412 ORTHO05D000429 1.5e-13 80.5 190 32.6
Lj6C698G16 Lonicera japonica HOM05D000412 ORTHO05D000429 2.6e-13 79.7 191 36.6
Haze_00808 Corylus avellana HOM05D000412 ORTHO05D000429 3.4e-13 79.3 194 34.5
Sed0007121 Sechium edule HOM05D000412 ORTHO05D000429 3.4e-13 79.3 202 31.2
Nitab4.5_0000186g0010 Nicotiana tabacum HOM05D000412 ORTHO05D000429 4.4e-13 79.0 207 32.4
Ca_00938_v3 Cicer arietinum L. HOM05D000412 ORTHO05D000429 5.8e-13 78.6 210 32.4
Potri.008G100200 Populus trichocarpa HOM05D000412 ORTHO05D000429 5.8e-13 78.6 224 29.9
Sc19g0002200 Simmondsia chinensis HOM05D000412 ORTHO05D000429 5.8e-13 78.6 187 33.7
Actinidia07523 Actinidia chinensis HOM05D000412 ORTHO05D000429 7.5e-13 78.2 216 31.9
Rhsim04G0245600 Rhododendron simsii HOM05D000412 ORTHO05D000429 7.5e-13 78.2 199 33.2
Rhsim04G0246100 Rhododendron simsii HOM05D000412 ORTHO05D000429 7.5e-13 78.2 199 33.2
vmacro07990 Vaccinium macrocarpon HOM05D000412 ORTHO05D000429 7.5e-13 78.2 204 32.8
arahy.Tifrunner.gnm1.ann1.7B7L4H Arachis hypogaea HOM05D000412 ORTHO05D000429 9.8e-13 77.8 189 31.2
TWI09G1009 Tripterygium wilfordii HOM05D000412 ORTHO05D000429 9.8e-13 77.8 212 35.4
CSS0049859 Camellia sinensis var. sinensis HOM05D000412 ORTHO05D000429 1.3e-12 77.4 217 32.3
Dinv15619 Davidia involucrata HOM05D000412 ORTHO05D000429 1.3e-12 77.4 204 35.8
Eucgr.H04096 Eucalyptus grandis HOM05D000412 ORTHO05D000429 1.3e-12 77.4 217 31.3
MSTRG.10179 Avicennia marina HOM05D000412 ORTHO05D000429 1.7e-12 77.0 207 31.4
ECA246G1000 Erigeron canadensis HOM05D000412 ORTHO05D000429 1.7e-12 77.0 205 31.2
EL10Ac3g06284 Beta vulgaris HOM05D000412 ORTHO05D000429 2.2e-12 76.6 204 33.3
CSS0022073 Camellia sinensis var. sinensis HOM05D000412 ORTHO05D000429 2.2e-12 76.6 217 32.3
Ciclev10004458m.g Citrus clementina HOM05D000412 ORTHO05D000429 2.2e-12 76.6 202 31.7
TWI53G0549 Tripterygium wilfordii HOM05D000412 ORTHO05D000429 2.9e-12 76.3 199 33.2
CsaV3_6G000120 Cucumis sativus L. HOM05D000412 ORTHO05D000429 3.7e-12 75.9 206 31.1
VMungo1215G2106 Vigna mungo HOM05D000412 ORTHO05D000429 3.7e-12 75.9 191 30.4
Hma1.2p1_0013F.1_g008020 Hydrangea macrophylla HOM05D000412 ORTHO05D000429 4.9e-12 75.5 218 31.2
Lalb_Chr20g0120311 Lupinus albus HOM05D000412 ORTHO05D000429 4.9e-12 75.5 199 31.7
Sabra08G0075800 Salix brachista HOM05D000412 ORTHO05D000429 4.9e-12 75.5 233 31.8
VMungo0540G2499 Vigna mungo HOM05D000412 ORTHO05D000429 4.9e-12 75.5 186 30.6
CANSAT78G0952 Cannabis sativa HOM05D000412 ORTHO05D000429 6.4e-12 75.1 199 34.2
Migut.G00015 Erythranthe guttata HOM05D000412 ORTHO05D000429 6.4e-12 75.1 208 29.8
MELO3C021242.2 Cucumis melo HOM05D000412 ORTHO05D000429 8.3e-12 74.7 206 31.6
Migut.O00389 Erythranthe guttata HOM05D000412 ORTHO05D000429 8.3e-12 74.7 211 30.8
Lalb_Chr18g0058421 Lupinus albus HOM05D000412 ORTHO05D000429 8.3e-12 74.7 195 32.8
FAN17G2442 Fragaria x ananassa HOM05D000412 ORTHO05D000429 1.4e-11 73.9 194 30.9
Nitab4.5_0000895g0110 Nicotiana tabacum HOM05D000412 ORTHO05D000429 1.4e-11 73.9 214 29.9
Nitab4.5_0005769g0050 Nicotiana tabacum HOM05D000412 ORTHO05D000429 1.9e-11 73.6 214 30.8
GSVIVG01017649001 Vitis vinifera HOM05D000412 ORTHO05D000429 1.9e-11 73.6 51 66.7
CDE11G1101 Ceratophyllum demersum HOM05D000412 ORTHO05D000429 2.4e-11 73.2 190 31.6
Glyma.15G136400 Glycine max HOM05D000412 ORTHO05D000429 2.4e-11 73.2 206 33.5
Lj6g0002580 Lotus japonicus HOM05D000412 ORTHO05D000429 2.4e-11 73.2 190 32.6
SGA_v2.0_scaffold64G22050 Striga asiatica HOM05D000412 ORTHO05D000429 2.4e-11 73.2 188 31.4
DCAR_026959 Daucus carota HOM05D000412 ORTHO05D000429 3.2e-11 72.8 200 32.0
Medtr2g032660 Medicago truncatula HOM05D000412 ORTHO05D000429 3.2e-11 72.8 171 33.3
FAN07G2893 Fragaria x ananassa HOM05D000412 ORTHO05D000429 5.4e-11 72.0 191 30.4
Psat0ss1196g0680 Pisum sativum HOM05D000412 ORTHO05D000429 7.0e-11 71.6 201 34.3
Psat1g163000 Pisum sativum HOM05D000412 ORTHO05D000429 7.0e-11 71.6 189 31.7
DCAR_023380 Daucus carota HOM05D000412 ORTHO05D000429 9.2e-11 71.2 204 30.4
TPR.G30810 Trifolium pratense HOM05D000412 ORTHO05D000429 9.2e-11 71.2 52 65.4
arahy.Tifrunner.gnm1.ann1.K8ASES Arachis hypogaea HOM05D000412 ORTHO05D000429 1.6e-10 70.5 168 33.3
ClCG06G004290 Citrullus lanatus HOM05D000412 ORTHO05D000429 1.6e-10 70.5 202 33.2
Actinidia18493 Actinidia chinensis HOM05D000412 ORTHO05D000429 2.0e-10 70.1 127 40.2
Cc03_g00370 Coffea canephora HOM05D000412 ORTHO05D000429 2.0e-10 70.1 189 30.2
Sopen12g033800 Solanum pennellii HOM05D000412 ORTHO05D000429 2.0e-10 70.1 245 29.4
TAR636G1100 Trochodendron aralioides HOM05D000412 ORTHO05D000429 2.0e-10 70.1 199 31.7
CSS0032476 Camellia sinensis var. sinensis HOM05D000412 ORTHO05D000429 2.7e-10 69.7 202 32.2
Gohir.A02G086600 Gossypium hirsutum HOM05D000412 ORTHO05D000429 2.7e-10 69.7 121 37.2
Lj4g0003655 Lotus japonicus HOM05D000412 ORTHO05D000429 3.5e-10 69.3 200 28.5
TAR362G1156 Trochodendron aralioides HOM05D000412 ORTHO05D000429 1.0e-09 67.8 200 31.5
Aqoxy2G02616 Aquilegia oxysepala HOM05D000412 ORTHO05D000429 1.3e-09 67.4 196 32.1
arahy.Tifrunner.gnm1.ann1.CFVF1U Arachis hypogaea HOM05D000412 ORTHO05D000429 1.3e-09 67.4 190 28.9
Psat2g039200 Pisum sativum HOM05D000412 ORTHO05D000429 1.7e-09 67.0 49 63.3
Solyc12g099090.3 Solanum lycopersicum HOM05D000412 ORTHO05D000429 2.3e-09 66.6 232 29.3
TPR.G12538 Trifolium pratense HOM05D000412 ORTHO05D000429 3.0e-09 66.2 157 34.4
SHI00067 Sapria himalayana HOM05D000412 ORTHO05D000429 3.9e-09 65.9 180 35.0
Zm00001eb156740 Zea mays HOM05D000412 ORTHO05D000429 5.0e-09 65.5 93 38.7
Ah.13g073010 Amaranthus hybridus HOM05D000412 ORTHO05D000429 6.6e-09 65.1 197 30.5
Medtr4g123630 Medicago truncatula HOM05D000412 ORTHO05D000429 1.1e-08 64.3 179 30.7
Psat2g039160 Pisum sativum HOM05D000412 ORTHO05D000429 1.1e-08 64.3 178 31.5
Ca_21389_v3 Cicer arietinum L. HOM05D000412 ORTHO05D000429 1.5e-08 63.9 170 31.8
arahy.Tifrunner.gnm1.ann1.18BCEG Arachis hypogaea HOM05D000412 ORTHO05D000429 2.5e-08 63.2 189 27.5
CiPaw.01G132100 Carya illinoinensis HOM05D000412 ORTHO05D000429 9.5e-08 61.2 191 30.4
Lsat_1_v5_gn_6_117180 Lactuca sativa HOM05D000412 ORTHO05D000429 9.5e-08 61.2 189 28.0
Sed0012157 Sechium edule HOM05D000412 ORTHO05D000429 1.2e-07 60.8 174 31.0
Zm00001eb004420 Zea mays HOM05D000412 ORTHO05D000429 2.8e-07 59.7 42 59.5
Zm00001eb403260 Zea mays HOM05D000412 ORTHO05D000429 2.8e-07 59.7 107 36.4
ATR0737G129 Amborella trichopoda HOM05D000412 ORTHO05D000429 3.6e-07 59.3 44 54.5
MBI18_g09657_MAGBIO Magnolia biondii HOM05D000412 ORTHO05D000429 3.6e-07 59.3 171 30.4
Phvul.003G119300 Phaseolus vulgaris HOM05D000412 ORTHO05D000429 3.6e-07 59.3 48 54.2
Oeu060894.1 Olea europaea HOM05D000412 ORTHO05D000429 6.2e-07 58.5 117 32.5
Zm00001eb057150 Zea mays HOM05D000412 ORTHO05D000429 8.0e-07 58.2 40 60.0
Glyma.09G031200 Glycine max HOM05D000412 ORTHO05D000429 1.1e-06 57.8 40 65.0
Os03g0748000 Oryza sativa ssp. japonica HOM05D000412 ORTHO05D000429 1.4e-06 57.4 117 33.3
VMungo0540G0775 Vigna mungo HOM05D000412 ORTHO05D000429 1.4e-06 57.4 95 36.8
Zm00001eb300970 Zea mays HOM05D000412 ORTHO05D000429 1.4e-06 57.4 118 34.7
Cfa017772 Carpinus fangiana HOM05D000412 ORTHO05D000429 1.8e-06 57.0 42 54.8
Hma1.2p1_0884F.1_g232480 Hydrangea macrophylla HOM05D000412 ORTHO05D000429 1.8e-06 57.0 44 54.5
Os03g0158500 Oryza sativa ssp. japonica HOM05D000412 ORTHO05D000429 1.8e-06 57.0 40 57.5
ATR1091G091 Amborella trichopoda HOM05D000412 ORTHO05D000429 2.3e-06 56.6 43 55.8
Zm00001eb360390 Zea mays HOM05D000412 ORTHO05D000429 2.3e-06 56.6 91 35.2
Aqoxy1G01355 Aquilegia oxysepala HOM05D000412 ORTHO05D000429 3.1e-06 56.2 44 54.5
Psat0s14g0040 Pisum sativum HOM05D000412 ORTHO05D000429 3.1e-06 56.2 40 57.5
Gohir.D02G236800 Gossypium hirsutum HOM05D000412 ORTHO05D000429 4.0e-06 55.8 44 54.5
Gorai.005G265300 Gossypium raimondii HOM05D000412 ORTHO05D000429 4.0e-06 55.8 44 54.5
Oeu064600.3 Olea europaea HOM05D000412 ORTHO05D000429 4.0e-06 55.8 44 54.5
Sp5g34350 Schrenkiella parvula HOM05D000412 ORTHO05D000429 4.0e-06 55.8 44 56.8
TAR365G0151 Trochodendron aralioides HOM05D000412 ORTHO05D000429 4.0e-06 55.8 112 33.0
Carub.0008s2171 Capsella rubella HOM05D000412 ORTHO05D000429 5.2e-06 55.5 42 47.6
COL.COLO4_17722 Corchorus olitorius HOM05D000412 ORTHO05D000429 5.2e-06 55.5 44 52.3
Nn4g25445 Nelumbo nucifera HOM05D000412 ORTHO05D000429 5.2e-06 55.5 48 50.0
QL04p095998 Quercus lobata HOM05D000412 ORTHO05D000429 5.2e-06 55.5 42 54.8
HPP92_013957 Vanilla planifolia HOM05D000412 ORTHO05D000429 5.2e-06 55.5 42 54.8
GSVIVG01023248001 Vitis vinifera HOM05D000412 ORTHO05D000429 5.2e-06 55.5 44 54.5
FAN04G0677 Fragaria x ananassa HOM05D000412 ORTHO05D000429 6.8e-06 55.1 44 56.8
Potri.010G175500 Populus trichocarpa HOM05D000412 ORTHO05D000429 6.8e-06 55.1 42 52.4
SMO364G0569 Selaginella moellendorffii HOM05D000412 ORTHO05D000429 6.8e-06 55.1 42 57.1
CARHR274730 Cardamine hirsuta HOM05D000412 ORTHO05D000429 8.9e-06 54.7 104 30.8
CDE04G1184 Ceratophyllum demersum HOM05D000412 ORTHO05D000429 8.9e-06 54.7 65 36.9
Ciclev10000713m.g Citrus clementina HOM05D000412 ORTHO05D000429 8.9e-06 54.7 113 33.6
Haze_18465 Corylus avellana HOM05D000412 ORTHO05D000429 8.9e-06 54.7 37 59.5
MD05G1240700 Malus domestica HOM05D000412 ORTHO05D000429 8.9e-06 54.7 38 60.5
Manes.09G141700 Manihot esculenta HOM05D000412 ORTHO05D000429 8.9e-06 54.7 40 52.5
Sc09g0007520 Simmondsia chinensis HOM05D000412 ORTHO05D000429 8.9e-06 54.7 42 52.4
TAR626G1839 Trochodendron aralioides HOM05D000412 ORTHO05D000429 8.9e-06 54.7 44 52.3


User provided reference genes

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