Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 5.9e-80 300.8 154 100.0
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.5e-70 268.9 153 88.9
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 1.2e-69 266.5 154 89.6
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 1.2e-69 266.5 154 89.6
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 2.7e-69 265.4 154 90.3
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 2.7e-69 265.4 154 90.3
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 6.1e-69 264.2 154 87.7
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 6.1e-69 264.2 154 88.3
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 1.0e-68 263.5 154 89.0
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 1.4e-68 263.1 154 87.7
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 5.2e-68 261.2 150 89.3
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 4.4e-67 258.1 154 87.7
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 7.0e-65 250.8 154 85.7
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 1.0e-63 246.9 154 83.8
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.0e-52 210.3 119 87.4
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 1.0e-52 210.3 153 72.5
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 7.8e-48 194.1 133 69.9
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.1e-46 190.3 129 72.1
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.1e-46 190.3 129 72.1
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.6e-45 186.4 129 69.8
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 3.1e-44 182.2 144 66.0
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 4.0e-44 181.8 144 64.6
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 8.9e-44 180.6 129 70.5
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 4.4e-43 178.3 118 73.7
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 5.8e-43 177.9 123 69.1
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 7.5e-43 177.6 136 64.0
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.3e-42 176.8 114 75.4
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 1.7e-42 176.4 113 77.0
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 2.9e-42 175.6 115 75.7
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 2.9e-42 175.6 115 75.7
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 2.9e-42 175.6 128 67.2
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 3.7e-42 175.3 118 71.2
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 3.7e-42 175.3 128 69.5
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 6.4e-42 174.5 122 68.9
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 8.3e-42 174.1 137 64.2
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 1.1e-41 173.7 122 68.9
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 1.9e-41 172.9 144 59.7
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 2.4e-41 172.6 131 64.1
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 3.2e-41 172.2 139 64.0
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 4.1e-41 171.8 113 71.7
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 4.1e-41 171.8 118 70.3
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 5.4e-41 171.4 113 75.2
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 5.4e-41 171.4 115 72.2
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 7.1e-41 171.0 129 66.7
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 9.2e-41 170.6 114 70.2
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 9.2e-41 170.6 146 60.3
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 1.2e-40 170.2 137 65.7
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 1.6e-40 169.9 121 69.4
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 2.1e-40 169.5 135 60.0
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 2.7e-40 169.1 140 65.0
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 3.5e-40 168.7 112 70.5
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 3.5e-40 168.7 112 70.5
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 4.6e-40 168.3 124 66.9
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 4.6e-40 168.3 148 58.8
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 6.0e-40 167.9 142 59.9
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 7.8e-40 167.5 126 67.5
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 7.8e-40 167.5 115 68.7
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 7.8e-40 167.5 148 58.8
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 7.8e-40 167.5 148 58.8
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 1.3e-39 166.8 118 66.9
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 1.7e-39 166.4 112 71.4
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 3.0e-39 165.6 119 71.4
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 3.0e-39 165.6 119 71.4
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 3.0e-39 165.6 124 66.1
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 3.0e-39 165.6 189 50.3
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 3.9e-39 165.2 112 71.4
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 6.6e-39 164.5 121 65.3
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 6.6e-39 164.5 124 69.4
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 1.1e-38 163.7 127 66.1
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 1.1e-38 163.7 108 74.1
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 1.9e-38 162.9 118 71.2
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.3e-38 162.2 139 57.6
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 9.5e-38 160.6 121 64.5
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 2.1e-37 159.5 140 60.0
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 2.8e-37 159.1 127 61.4
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 2.8e-37 159.1 115 69.6
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 4.7e-37 158.3 163 51.5
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 6.2e-37 157.9 112 66.1
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 1.4e-36 156.8 145 56.6
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 2.3e-36 156.0 124 62.1
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 3.1e-36 155.6 143 53.8
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 8.9e-36 154.1 167 55.1
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 1.5e-35 153.3 122 62.3
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 3.4e-35 152.1 147 53.7
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 6.4e-34 147.9 143 55.2
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 3.5e-32 142.1 122 59.8
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 2.3e-31 139.4 92 72.8
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 2.3e-31 139.4 116 61.2
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 5.1e-31 138.3 95 68.4
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 5.1e-31 138.3 95 67.4
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 4.7e-29 131.7 113 61.1
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 3.1e-28 129.0 113 60.2
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 5.2e-28 128.3 122 56.6
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 1.5e-27 126.7 102 63.7
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 3.4e-27 125.6 113 58.4
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 2.9e-26 122.5 137 52.6
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 8.4e-26 120.9 85 70.6
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 1.1e-25 120.6 117 51.3
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 1.4e-25 120.2 116 54.3
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 4.2e-25 118.6 121 52.1
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 7.8e-24 114.4 115 47.8
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.0e-23 114.0 101 56.4
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 1.7e-23 113.2 135 44.4
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 2.5e-22 109.4 70 75.7
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 6.2e-21 104.8 129 45.0
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 2.4e-20 102.8 76 65.8
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 1.3e-18 97.1 61 77.0
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 1.6e-16 90.1 68 63.2
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 2.7e-16 89.4 53 79.2
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 2.3e-15 86.3 54 79.6
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 1.8e-12 76.6 58 62.1
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 6.9e-12 74.7 55 67.3
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.7e-10 70.1 92 47.8
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 1.4e-09 67.0 102 35.3
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 2.4e-09 66.2 79 51.9
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 7.9e-08 61.2 61 45.9
Thecc.01G162200 Theobroma cacao HOM05D006846 ORTHO05D008473 1.9e-06 56.6 59 59.3


User provided reference genes

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