Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 4.6e-43 177.6 94 100.0
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 6.7e-34 147.1 108 77.8
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 2.5e-33 145.2 107 78.5
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 2.6e-30 135.2 107 73.8
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 7.6e-30 133.7 107 72.9
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 9.9e-30 133.3 107 71.0
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 4.9e-29 131.0 107 72.9
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 4.9e-29 131.0 107 72.9
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 3.2e-28 128.3 107 72.9
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 9.3e-28 126.7 107 69.2
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 9.3e-28 126.7 107 69.2
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 1.6e-27 125.9 108 69.4
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 4.6e-27 124.4 107 67.3
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.8e-26 122.5 108 66.7
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.8e-26 122.5 107 70.1
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 5.1e-26 120.9 107 65.4
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 8.7e-26 120.2 107 69.2
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 8.7e-26 120.2 107 69.2
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 5.6e-25 117.5 107 68.2
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 2.4e-23 112.1 76 85.5
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 2.4e-23 112.1 76 85.5
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 1.4e-20 102.8 107 59.8
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 7.7e-14 80.5 108 47.2
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 7.7e-14 80.5 104 51.0
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 1.7e-13 79.3 106 45.3
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 1.7e-13 79.3 65 63.1
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 2.2e-13 79.0 106 48.1
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 2.9e-13 78.6 106 47.2
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 5.0e-13 77.8 110 44.5
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 6.5e-13 77.4 103 47.6
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 1.9e-12 75.9 106 45.3
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 1.9e-12 75.9 106 48.1
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 2.5e-12 75.5 106 48.1
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 4.2e-12 74.7 106 44.3
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 5.5e-12 74.3 108 47.2
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 9.4e-12 73.6 107 45.8
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 1.2e-11 73.2 107 45.8
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 2.1e-11 72.4 108 46.3
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 2.1e-11 72.4 91 46.2
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 3.6e-11 71.6 107 43.9
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 3.6e-11 71.6 107 43.9
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 4.6e-11 71.2 89 53.9
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 4.6e-11 71.2 102 44.1
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 6.1e-11 70.9 84 51.2
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 6.1e-11 70.9 84 51.2
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 6.1e-11 70.9 84 51.2
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 6.1e-11 70.9 107 45.8
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 1.0e-10 70.1 100 45.0
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 1.4e-10 69.7 106 42.5
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 1.4e-10 69.7 107 42.1
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 1.4e-10 69.7 106 43.4
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 1.8e-10 69.3 107 42.1
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 1.8e-10 69.3 109 45.9
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 5.1e-10 67.8 106 42.5
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 6.7e-10 67.4 107 42.1
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 6.7e-10 67.4 105 43.8
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 6.7e-10 67.4 106 44.3
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 8.8e-10 67.0 107 43.9
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 1.5e-09 66.2 85 47.1
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 1.5e-09 66.2 84 46.4
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 2.5e-09 65.5 99 46.5
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 2.5e-09 65.5 106 44.3
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 3.3e-09 65.1 109 43.1
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 3.3e-09 65.1 109 41.3
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 4.3e-09 64.7 109 40.4
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 4.3e-09 64.7 108 42.6
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 5.7e-09 64.3 107 38.3
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 5.7e-09 64.3 90 50.0
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 9.7e-09 63.5 97 40.2
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 1.3e-08 63.2 107 41.1
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 1.7e-08 62.8 109 41.3
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 2.2e-08 62.4 107 42.1
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 2.2e-08 62.4 84 46.4
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 3.7e-08 61.6 106 38.7
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 4.8e-08 61.2 106 39.6
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 8.2e-08 60.5 84 44.0
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 8.2e-08 60.5 82 45.1
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 1.4e-07 59.7 85 44.7
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 1.8e-07 59.3 106 40.6
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 2.4e-07 58.9 107 40.2
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 2.4e-07 58.9 110 41.8
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 3.1e-07 58.5 107 41.1
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 4.1e-07 58.2 89 42.7
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 5.3e-07 57.8 110 41.8
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 5.3e-07 57.8 89 42.7
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 6.9e-07 57.4 93 39.8
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 9.1e-07 57.0 110 38.2
C06p03570 Brassica napus HOM05D029218 ORTHO05D042858 1.5e-06 56.2 40 72.5
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 1.5e-06 56.2 106 36.8
C06p03590 Brassica napus HOM05D029218 ORTHO05D009066 3.4e-06 55.1 41 73.2
C06p03640 Brassica napus HOM05D029218 ORTHO05D009066 3.4e-06 55.1 41 73.2
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 4.5e-06 54.7 106 36.8
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 5.9e-06 54.3 107 37.4


User provided reference genes

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