Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 2.7e-144 515.4 272 100.0
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 3.8e-122 441.8 275 87.3
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 3.5e-120 435.3 275 86.5
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 9.6e-118 427.2 276 81.2
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 6.3e-117 424.5 276 80.4
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 3.1e-116 422.2 277 80.5
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 5.3e-116 421.4 272 81.2
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 1.5e-115 419.9 276 79.7
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 5.9e-115 417.9 272 80.5
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.1e-108 397.1 263 81.4
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 2.0e-107 392.9 276 79.0
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.7e-104 382.5 271 80.4
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 1.7e-101 373.2 266 75.6
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 2.1e-96 356.3 276 72.8
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 2.0e-75 286.6 286 59.8
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 7.7e-75 284.6 287 59.9
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 7.7e-75 284.6 285 58.9
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 1.3e-74 283.9 291 59.1
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 2.2e-74 283.1 173 89.6
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 2.2e-74 283.1 173 89.6
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 2.9e-74 282.7 291 58.8
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 2.9e-74 282.7 291 58.8
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 1.1e-73 280.8 289 57.4
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 3.2e-73 279.3 287 58.9
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 4.7e-72 275.4 287 58.2
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 6.1e-72 275.0 286 59.1
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 6.1e-72 275.0 287 58.2
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 1.0e-71 274.2 168 89.3
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 4.4e-70 268.9 283 58.0
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.6e-67 260.4 280 57.1
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 1.9e-65 253.4 174 78.2
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.0e-63 247.7 186 78.0
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 2.3e-63 246.5 139 94.2
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 8.9e-63 244.6 139 93.5
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 8.9e-63 244.6 138 94.2
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 2.3e-58 229.9 161 76.4
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 2.8e-48 196.4 250 50.0
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 3.4e-38 162.9 128 71.1
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 2.1e-35 153.7 143 63.6
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 2.1e-35 153.7 143 63.6
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 1.3e-34 151.0 178 54.5
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 6.6e-34 148.7 268 36.9
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.1e-33 147.9 265 37.0
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 5.2e-31 139.0 233 36.9
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 6.9e-31 138.7 313 32.3
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 2.0e-30 137.1 279 35.1
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 4.4e-30 136.0 246 37.4
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 7.6e-30 135.2 258 36.4
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 9.9e-30 134.8 286 33.2
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 9.9e-30 134.8 266 35.3
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 2.9e-29 133.3 279 33.0
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 4.9e-29 132.5 243 36.2
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 4.9e-29 132.5 284 33.5
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 6.4e-29 132.1 314 31.8
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 8.4e-29 131.7 278 33.1
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 1.4e-28 131.0 237 36.3
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 1.4e-28 131.0 254 33.9
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 1.4e-28 131.0 247 34.8
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 2.4e-28 130.2 281 32.0
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 3.2e-28 129.8 279 32.6
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 3.2e-28 129.8 255 37.3
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 9.3e-28 128.3 279 34.1
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 1.2e-27 127.9 258 35.3
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 1.2e-27 127.9 229 37.6
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 1.2e-27 127.9 245 35.5
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 1.6e-27 127.5 239 36.4
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 2.1e-27 127.1 220 36.4
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.1e-27 127.1 252 34.5
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 2.7e-27 126.7 252 33.7
BcaB04g17431 Brassica carinata HOM05D004919 ORTHO05D005994 3.5e-27 126.3 86 75.6
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 3.5e-27 126.3 241 36.5
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 3.5e-27 126.3 236 36.0
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 4.6e-27 125.9 254 35.4
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 4.6e-27 125.9 250 35.2
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 1.3e-26 124.4 308 30.2
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 1.3e-26 124.4 306 30.7
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 1.7e-26 124.0 244 33.6
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 1.7e-26 124.0 293 31.1
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.7e-26 124.0 263 35.7
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.7e-26 124.0 252 34.1
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 1.7e-26 124.0 233 35.6
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 2.3e-26 123.6 253 34.4
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 2.3e-26 123.6 223 38.1
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 3.0e-26 123.2 242 33.9
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 3.0e-26 123.2 232 34.5
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 3.0e-26 123.2 285 32.6
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 5.1e-26 122.5 229 36.2
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 5.1e-26 122.5 262 33.2
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 6.6e-26 122.1 238 37.0
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 6.6e-26 122.1 244 34.0
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 6.6e-26 122.1 244 34.0
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 6.6e-26 122.1 244 34.4
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 8.7e-26 121.7 269 33.8
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 8.7e-26 121.7 301 31.2
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 8.7e-26 121.7 309 32.7
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 1.1e-25 121.3 254 35.4
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 1.9e-25 120.6 247 34.0
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 1.9e-25 120.6 232 35.3
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 2.5e-25 120.2 312 32.1
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 2.5e-25 120.2 293 32.8
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 2.5e-25 120.2 250 33.2
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 5.6e-25 119.0 251 34.7
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 7.3e-25 118.6 265 34.0
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 9.6e-25 118.2 250 33.2
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 1.6e-24 117.5 247 32.8
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 2.1e-24 117.1 233 33.9
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 2.8e-24 116.7 300 31.7
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 3.6e-24 116.3 284 30.6
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.6e-24 116.3 284 31.3
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 4.8e-24 115.9 237 35.4
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 4.8e-24 115.9 228 35.1
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 6.2e-24 115.5 294 31.0
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 6.2e-24 115.5 246 34.6
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.1e-23 114.8 329 29.2
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 1.1e-23 114.8 310 31.3
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 1.4e-23 114.4 266 31.6
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 3.1e-23 113.2 247 32.4
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 4.0e-23 112.8 233 34.3
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.0e-23 112.8 331 28.1
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 4.0e-23 112.8 259 32.0
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 4.0e-23 112.8 223 34.1
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 5.3e-23 112.5 291 31.3
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.0e-22 110.5 332 28.0
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 2.6e-22 110.2 225 34.2
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 3.4e-22 109.8 228 32.5
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 2.2e-21 107.1 263 33.1
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.9e-21 106.7 272 29.8
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 2.9e-21 106.7 249 32.5
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 3.8e-21 106.3 278 29.5
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 4.9e-21 105.9 230 34.3
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 6.4e-21 105.5 196 36.2
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 1.4e-20 104.4 187 35.8
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 2.4e-20 103.6 262 29.4
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.4e-20 103.6 214 36.4
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 4.2e-20 102.8 246 32.9
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 3.3e-17 93.2 266 29.7
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 1.6e-16 90.9 226 31.4
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 2.1e-16 90.5 213 32.9
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 2.8e-16 90.1 239 31.4
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 1.1e-15 88.2 253 32.0
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 1.2e-14 84.7 220 32.7
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 4.9e-13 79.3 252 29.4
BcaB04g17433 Brassica carinata HOM05D004919 ORTHO05D005994 6.4e-13 79.0 61 70.5
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 8.4e-13 78.6 241 29.0
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 1.2e-11 74.7 109 39.4
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 2.8e-08 63.5 208 28.8


User provided reference genes

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