Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 5.2e-221 770.8 400 100.0
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 2.1e-214 748.8 403 94.5
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 2.1e-214 748.8 403 94.5
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 1.8e-213 745.7 403 94.3
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 5.6e-207 724.2 398 95.0
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.3e-206 723.0 398 94.7
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 5.3e-205 717.6 404 90.3
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 1.9e-202 709.1 404 89.4
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.8e-197 692.6 403 87.3
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 1.2e-196 689.9 401 90.3
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 2.9e-195 685.3 383 91.9
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 2.7e-193 678.7 405 85.2
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 6.0e-193 677.6 404 84.4
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 4.6e-177 624.8 375 80.8
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.3e-176 622.5 395 77.7
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 2.7e-169 599.0 373 76.4
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.5e-167 592.4 376 76.1
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 9.7e-167 590.5 376 75.8
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 2.2e-166 589.3 372 75.8
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 8.2e-166 587.4 376 75.3
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 6.9e-165 584.3 372 75.8
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 4.5e-164 581.6 373 78.3
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 2.2e-163 579.3 378 73.5
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 2.9e-163 578.9 402 71.4
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 5.0e-163 578.2 373 73.5
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 5.0e-163 578.2 373 75.1
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 5.5e-162 574.7 379 73.4
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 7.2e-162 574.3 383 72.1
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.2e-161 573.5 380 72.4
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 2.7e-161 572.4 397 69.3
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 4.7e-161 571.6 375 74.7
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.8e-160 569.7 380 72.1
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 2.3e-160 569.3 381 74.5
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.3e-160 569.3 379 71.8
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 2.0e-159 566.2 378 73.8
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 5.7e-159 564.7 372 71.5
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 9.7e-159 563.9 374 71.1
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 9.7e-159 563.9 376 71.3
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.3e-158 563.5 378 74.9
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.1e-157 560.5 368 73.4
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 1.8e-157 559.7 380 71.3
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 2.4e-157 559.3 423 65.2
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 2.4e-157 559.3 373 72.1
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.2e-156 557.0 404 67.6
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 1.5e-156 556.6 380 74.7
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 1.5e-156 556.6 373 70.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.6e-156 555.8 373 71.6
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.3e-155 553.5 384 69.8
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.7e-155 553.1 376 69.1
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 2.2e-155 552.7 379 70.2
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 3.8e-155 552.0 372 73.9
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 6.5e-155 551.2 384 68.8
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.1e-154 550.4 373 69.2
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 2.5e-154 549.3 384 68.5
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 2.5e-154 549.3 380 70.0
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 5.5e-154 548.1 373 69.7
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 7.2e-154 547.7 373 69.2
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 9.4e-154 547.4 372 70.7
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 1.2e-153 547.0 376 68.6
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.7e-153 545.8 372 71.0
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 4.7e-153 545.0 373 70.8
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 1.4e-152 543.5 372 70.2
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 6.7e-152 541.2 386 67.6
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 2.0e-151 539.7 372 70.4
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.6e-151 539.3 405 67.4
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.3e-151 538.9 380 69.5
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 9.7e-151 537.3 386 68.1
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 1.4e-149 533.5 375 68.8
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 3.1e-149 532.3 429 61.3
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.6e-148 530.0 372 68.8
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.6e-148 530.0 372 69.9
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 2.6e-148 529.3 372 72.6
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 4.5e-148 528.5 373 67.3
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.3e-147 526.9 372 72.3
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 5.0e-147 525.0 397 64.2
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 7.2e-146 521.2 372 70.4
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 9.4e-146 520.8 375 68.0
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.6e-145 520.0 372 70.2
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 3.6e-145 518.8 446 59.2
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 6.1e-145 518.1 373 69.2
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.8e-144 516.5 372 66.9
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 2.3e-144 516.2 380 66.8
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 4.0e-144 515.4 373 67.8
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.1e-141 505.8 331 74.0
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 9.1e-141 504.2 316 76.6
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 3.5e-140 502.3 373 65.7
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 3.5e-140 502.3 385 64.2
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 6.5e-139 498.0 316 76.3
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 3.0e-136 489.2 316 71.5
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.6e-132 476.9 391 61.4
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.2e-129 467.2 398 59.0
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 2.8e-129 466.1 325 70.8
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.5e-127 460.3 356 62.4
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.6e-127 459.5 356 61.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 7.5e-127 458.0 399 57.6
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 9.2e-125 451.1 363 60.9
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.2e-124 450.7 403 61.0
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 1.6e-124 450.3 386 59.8
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.0e-123 446.0 376 60.1
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 1.5e-119 433.7 395 55.4
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 1.5e-119 433.7 378 58.2
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 4.1e-117 425.6 373 58.2
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 9.2e-117 424.5 379 58.0
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.6e-116 423.7 375 55.2
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.3e-115 419.9 277 75.5
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 7.5e-111 404.8 322 64.9
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 4.1e-109 399.1 273 71.1
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.2e-108 397.5 275 69.8
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 5.1e-107 392.1 359 56.5
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 6.6e-107 391.7 378 53.7
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 3.4e-103 379.4 351 54.7
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 7.8e-100 368.2 373 53.4
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.1e-97 360.1 390 47.9
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.8e-97 359.8 398 47.2
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 1.9e-93 347.1 624 36.9
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 1.9e-90 337.0 372 49.5
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 1.6e-81 307.4 224 67.4
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 1.4e-72 277.7 534 37.1
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 2.0e-71 273.9 158 77.2
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 2.0e-71 273.9 158 77.2
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 1.2e-68 264.6 159 76.1
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 2.1e-68 263.8 191 67.5
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 2.9e-62 243.4 183 70.5
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 6.9e-56 222.2 194 62.4
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 2.9e-54 216.9 155 68.4
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.7e-52 210.3 151 69.5
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 4.6e-52 209.5 199 55.3
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.9e-46 190.3 121 75.2
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.9e-46 190.3 121 75.2
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.1e-45 188.3 120 74.2
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.4e-40 171.4 307 37.8
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 3.3e-34 150.2 341 32.0
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.1e-28 131.0 203 44.3
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 2.2e-25 120.9 75 69.3
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 3.7e-25 120.2 94 56.4
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 1.4e-24 118.2 87 64.4
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.2e-22 110.9 170 40.6
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 3.6e-20 103.6 325 29.8
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 2.3e-19 100.9 69 69.6
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.3e-17 95.1 322 26.4
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 3.1e-16 90.5 319 25.1
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 2.7e-15 87.4 318 25.2
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 1.0e-14 85.5 336 24.7
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 1.0e-14 85.5 339 25.4
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 2.3e-14 84.3 335 24.2
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 8.6e-14 82.4 47 83.0
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 1.1e-13 82.0 342 23.1
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 1.5e-13 81.6 339 23.3
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.9e-13 81.3 327 23.9
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 9.5e-13 79.0 355 23.4
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 1.2e-12 78.6 339 23.9
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 1.6e-12 78.2 333 23.7
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.6e-12 78.2 331 22.1
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 2.1e-12 77.8 348 23.0
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 2.1e-12 77.8 338 24.0
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 3.6e-12 77.0 342 23.4
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 6.1e-12 76.3 45 80.0
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 6.1e-12 76.3 45 80.0
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 6.1e-12 76.3 45 80.0
PRCOL_00002385 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 8.0e-12 75.9 265 27.5
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 1.4e-11 75.1 343 23.9
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 1.4e-11 75.1 340 23.8
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.4e-11 75.1 345 22.3
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 8.9e-11 72.4 340 22.9
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 8.9e-11 72.4 340 22.9
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.0e-10 71.2 330 23.9
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.6e-10 70.9 145 30.3
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 3.4e-10 70.5 331 22.7
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 4.4e-10 70.1 337 22.0
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.4e-10 70.1 330 23.9
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 4.4e-10 70.1 349 23.5
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 4.4e-10 70.1 332 22.3
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 5.7e-10 69.7 170 30.6
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 5.7e-10 69.7 327 22.0
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 3.2e-08 63.9 73 45.2
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 7.0e-08 62.8 296 24.3
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 8.6e-06 55.8 179 32.4


User provided reference genes

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