Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 2.2e-252 875.2 444 100.0
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 5.1e-209 731.1 446 87.2
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 1.6e-207 726.1 446 86.8
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 4.5e-205 718.0 467 83.3
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 4.5e-205 718.0 467 83.3
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 7.4e-200 700.7 475 80.8
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 4.8e-183 644.8 449 77.7
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 1.5e-181 639.8 450 77.3
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 4.7e-170 601.7 450 73.8
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 6.3e-167 591.3 451 73.6
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 3.5e-165 585.5 449 71.9
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 7.2e-163 577.8 469 69.3
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 4.3e-131 472.2 455 59.8
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 9.4e-70 268.5 443 42.9
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 6.3e-66 255.8 446 41.9
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 1.1e-65 255.0 459 40.3
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 1.3e-63 248.1 449 39.2
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 2.5e-62 243.8 469 36.7
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 7.9e-61 238.8 453 37.7
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 1.4e-60 238.0 459 39.2
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 2.0e-59 234.2 495 37.6
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 5.3e-57 226.1 477 35.0
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 7.7e-56 222.2 474 36.1
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 6.5e-55 219.2 447 39.6
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 8.5e-55 218.8 488 34.2
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 1.5e-54 218.0 461 39.5
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 1.9e-54 217.6 455 38.0
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 1.2e-53 214.9 472 36.4
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 2.1e-53 214.2 478 34.1
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 8.0e-53 212.2 477 34.2
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 4.0e-52 209.9 447 35.6
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 5.2e-52 209.5 445 37.3
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 1.1e-51 208.4 442 34.4
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 4.4e-51 206.5 447 36.7
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 8.2e-50 202.2 446 33.4
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 1.4e-49 201.4 459 35.5
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 5.3e-49 199.5 436 38.1
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 2.0e-48 197.6 321 39.3
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 2.0e-48 197.6 445 36.0
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 1.0e-47 195.3 457 33.5
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 1.7e-47 194.5 460 34.3
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 2.9e-47 193.7 461 35.4
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 2.9e-47 193.7 489 30.9
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 8.5e-47 192.2 451 35.3
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 8.5e-47 192.2 451 35.3
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 1.9e-46 191.0 475 35.2
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 2.5e-46 190.7 446 34.1
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 4.2e-46 189.9 456 35.3
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 1.2e-45 188.3 410 34.9
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 1.6e-45 188.0 448 35.9
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 2.1e-45 187.6 439 31.9
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 3.6e-45 186.8 447 32.7
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 8.0e-45 185.7 461 35.1
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 8.0e-45 185.7 445 32.8
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 1.0e-44 185.3 458 35.4
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 8.8e-44 182.2 473 32.8
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 2.6e-43 180.6 442 32.1
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 1.1e-41 175.3 475 32.4
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 1.8e-41 174.5 458 31.9
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 3.1e-41 173.7 455 30.5
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 4.1e-41 173.3 444 34.7
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 9.1e-41 172.2 289 40.5
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 1.2e-40 171.8 440 32.3
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 1.6e-40 171.4 460 33.7
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.7e-40 170.6 453 33.6
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 3.5e-40 170.2 326 36.8
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 7.7e-40 169.1 452 34.5
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 6.5e-39 166.0 443 33.2
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 1.1e-38 165.2 446 34.1
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 3.2e-38 163.7 449 33.0
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 4.2e-38 163.3 456 31.1
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 9.4e-38 162.2 322 34.8
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 9.4e-38 162.2 443 31.8
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 1.2e-37 161.8 449 32.3
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 2.1e-37 161.0 468 30.8
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 3.6e-37 160.2 244 41.4
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 4.7e-37 159.8 467 31.5
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 4.4e-35 153.3 473 31.5
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 3.7e-34 150.2 268 36.9
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 5.4e-33 146.4 223 41.3
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 1.4e-28 131.7 224 41.5
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 2.6e-27 127.5 468 27.8
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 3.4e-27 127.1 251 36.7
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 3.4e-27 127.1 144 50.7
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 1.1e-25 122.1 428 29.2
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 1.4e-25 121.7 224 39.3
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 2.4e-25 120.9 247 34.0
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 4.6e-24 116.7 177 40.1
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 2.3e-23 114.4 357 31.7
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 2.3e-23 114.4 174 38.5
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 1.1e-22 112.1 187 39.0
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 1.5e-22 111.7 188 38.3
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 1.2e-21 108.6 172 37.2
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 2.8e-21 107.5 315 35.2
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 9.8e-19 99.0 79 58.2
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 2.9e-18 97.4 99 48.5
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 4.1e-17 93.6 248 31.0
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 1.2e-16 92.0 148 37.8
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 5.0e-15 86.7 58 69.0
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.5e-14 84.3 122 41.8
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 5.2e-12 76.6 208 29.3
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 5.2e-12 76.6 208 29.3
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 4.9e-10 70.1 56 62.5
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 4.9e-10 70.1 462 25.5
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 4.6e-08 63.5 62 48.4


User provided reference genes

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