Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 7.5e-39 163.3 79 100.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 7.5e-39 163.3 79 100.0
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 3.7e-38 161.0 78 98.7
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.7e-35 152.1 78 94.9
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 4.3e-34 147.5 78 94.9
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 4.3e-34 147.5 78 94.9
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 9.5e-34 146.4 78 93.6
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 9.5e-34 146.4 78 93.6
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 9.5e-34 146.4 78 93.6
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.6e-33 145.6 78 92.3
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 3.6e-33 144.4 78 91.0
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 3.6e-33 144.4 78 91.0
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 8.1e-33 143.3 80 91.2
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.1e-32 142.9 78 91.0
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.8e-32 142.1 78 89.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 4.0e-32 141.0 80 90.0
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 6.8e-32 140.2 80 90.0
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 6.8e-32 140.2 80 90.0
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 6.8e-32 140.2 80 90.0
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 8.9e-32 139.8 80 90.0
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.7e-30 135.6 77 87.0
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 4.9e-30 134.0 78 83.3
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.6e-28 129.0 78 80.8
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.6e-25 119.0 75 78.7
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 6.2e-25 117.1 78 74.4
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 5.2e-24 114.0 75 77.3
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 9.0e-24 113.2 80 72.5
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 9.0e-24 113.2 75 72.0
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 9.0e-24 113.2 64 82.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.5e-23 112.5 67 79.1
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.5e-23 112.5 75 74.7
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.5e-23 112.5 71 78.9
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.5e-23 112.5 63 84.1
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.5e-23 112.5 63 84.1
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.0e-23 112.1 76 72.4
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 2.0e-23 112.1 76 72.4
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 2.6e-23 111.7 75 68.0
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 2.6e-23 111.7 67 79.1
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 2.6e-23 111.7 64 81.2
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 2.6e-23 111.7 62 85.5
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.4e-23 111.3 82 70.7
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 3.4e-23 111.3 67 82.1
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 3.4e-23 111.3 67 82.1
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 4.4e-23 110.9 67 82.1
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 4.4e-23 110.9 75 74.7
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 5.8e-23 110.5 67 79.1
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 5.8e-23 110.5 68 79.4
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 5.8e-23 110.5 62 85.5
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 7.6e-23 110.2 67 77.6
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 7.6e-23 110.2 68 76.5
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 7.6e-23 110.2 63 84.1
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 9.9e-23 109.8 62 83.9
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 9.9e-23 109.8 78 69.2
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.3e-22 109.4 62 82.3
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 1.7e-22 109.0 75 69.3
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.7e-22 109.0 64 79.7
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.2e-22 108.6 70 74.3
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 2.2e-22 108.6 70 74.3
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.2e-22 108.6 63 81.0
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 2.2e-22 108.6 70 77.1
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.9e-22 108.2 68 77.9
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 3.8e-22 107.8 77 72.7
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 3.8e-22 107.8 68 76.5
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-22 107.8 68 76.5
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-22 107.8 68 76.5
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-22 107.8 68 76.5
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-22 107.8 68 76.5
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 4.9e-22 107.5 63 82.5
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 4.9e-22 107.5 71 74.6
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 6.4e-22 107.1 70 72.9
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 6.4e-22 107.1 63 76.2
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 6.4e-22 107.1 68 75.0
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 6.4e-22 107.1 64 78.1
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 8.4e-22 106.7 62 79.0
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 8.4e-22 106.7 64 76.6
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 8.4e-22 106.7 67 79.1
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.1e-21 106.3 63 81.0
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.1e-21 106.3 66 78.8
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.4e-21 105.9 71 76.1
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.4e-21 105.9 75 70.7
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.4e-21 105.9 70 74.3
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.4e-21 105.9 75 70.7
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.9e-21 105.5 71 74.6
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.9e-21 105.5 70 72.9
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 3.2e-21 104.8 70 72.9
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.2e-21 104.8 67 74.6
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 3.2e-21 104.8 63 76.2
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 4.2e-21 104.4 67 74.6
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 5.4e-21 104.0 62 79.0
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 7.1e-21 103.6 79 67.1
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 9.3e-21 103.2 71 73.2
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.2e-20 102.8 75 68.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.2e-20 102.8 68 72.1
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.2e-20 102.8 66 74.2
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.6e-20 102.4 62 80.6
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.6e-20 102.4 62 75.8
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 1.6e-20 102.4 62 75.8
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.6e-20 102.4 62 75.8
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 2.1e-20 102.1 69 75.4
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 2.7e-20 101.7 79 65.8
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 3.5e-20 101.3 80 67.5
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 4.6e-20 100.9 67 71.6
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 4.6e-20 100.9 78 66.7
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 6.0e-20 100.5 63 79.4
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.8e-20 100.1 81 64.2
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 7.8e-20 100.1 63 81.0
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 7.8e-20 100.1 78 66.7
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.0e-19 99.8 79 67.1
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.0e-19 99.8 63 79.4
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.3e-19 98.6 76 64.5
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 5.1e-19 97.4 71 71.8
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 5.1e-19 97.4 68 69.1
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 5.1e-19 97.4 71 71.8
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 5.1e-19 97.4 85 64.7
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 6.6e-19 97.1 63 73.0
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.1e-18 96.3 62 79.0
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.1e-18 96.3 75 66.7
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.1e-18 96.3 62 79.0
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 2.5e-18 95.1 85 60.0
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.3e-18 93.6 65 70.8
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 7.3e-18 93.6 62 71.0
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.3e-17 92.8 58 77.6
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.3e-17 92.8 58 77.6
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 8.1e-17 90.1 63 69.8
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.2e-15 86.3 62 71.0
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 1.5e-15 85.9 62 62.9
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.9e-15 83.2 62 62.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.7e-14 82.4 62 62.9
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 6.4e-14 80.5 53 71.7
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 8.4e-14 80.1 62 61.3
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.9e-13 79.0 62 56.5
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 3.4e-07 58.2 52 55.8


User provided reference genes

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