Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-161 572.8 274 100.0
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 6.4e-61 238.4 156 82.7
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 1.9e-60 236.9 154 81.2
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 9.2e-60 234.6 156 81.4
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 9.2e-60 234.6 156 81.4
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.1e-59 233.4 154 81.8
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 3.5e-59 232.6 156 80.8
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.6e-56 223.8 158 79.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 8.1e-56 221.5 158 79.1
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 3.1e-55 219.5 159 78.6
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.2e-54 217.6 155 76.8
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-54 217.2 160 77.5
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 1.5e-54 217.2 160 77.5
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.7e-53 213.8 148 80.4
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 3.8e-53 212.6 155 76.1
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 6.4e-53 211.8 154 76.6
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-52 211.1 156 77.6
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 6.6e-50 201.8 155 74.2
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.8e-47 193.7 154 69.5
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 6.4e-45 185.3 147 69.4
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.5e-38 164.1 103 81.6
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 3.8e-37 159.5 78 98.7
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 3.8e-37 159.5 78 98.7
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 7.9e-35 151.8 146 56.2
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 3.9e-34 149.4 138 62.3
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 6.7e-34 148.7 151 57.6
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 8.7e-34 148.3 141 57.4
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.6e-32 144.1 142 58.5
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 2.8e-32 143.3 128 64.1
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 2.8e-32 143.3 126 61.9
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 4.8e-32 142.5 138 60.1
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 4.8e-32 142.5 142 57.7
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 6.2e-32 142.1 136 59.6
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 6.2e-32 142.1 133 60.2
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 8.2e-32 141.7 128 61.7
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 8.2e-32 141.7 128 61.7
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 8.2e-32 141.7 148 54.7
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 8.2e-32 141.7 138 59.4
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.4e-31 141.0 133 57.1
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.8e-31 140.6 142 57.0
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.8e-31 140.6 148 56.8
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.8e-31 140.6 133 57.9
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 2.4e-31 140.2 159 52.8
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 2.4e-31 140.2 151 55.0
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.4e-31 140.2 128 60.9
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 2.4e-31 140.2 141 56.0
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.4e-31 140.2 127 63.0
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 4.0e-31 139.4 136 56.6
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 4.0e-31 139.4 148 56.1
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.0e-31 139.4 148 56.1
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 4.0e-31 139.4 133 59.4
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 5.3e-31 139.0 143 55.9
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.3e-31 139.0 148 56.1
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 6.9e-31 138.7 127 59.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 6.9e-31 138.7 127 62.2
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 9.0e-31 138.3 141 56.0
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.2e-30 137.9 144 56.2
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.0e-30 137.1 148 52.0
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.6e-30 136.7 137 54.7
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 2.6e-30 136.7 145 53.8
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 2.6e-30 136.7 140 55.0
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.6e-30 136.7 143 55.9
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 4.5e-30 136.0 139 55.4
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 5.8e-30 135.6 137 52.6
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 7.6e-30 135.2 139 57.6
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 7.6e-30 135.2 133 57.1
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 7.6e-30 135.2 127 60.6
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.0e-29 134.8 145 55.2
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-29 134.4 143 55.9
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.7e-29 134.0 147 55.8
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.7e-29 134.0 146 53.4
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.7e-29 134.0 148 54.7
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.2e-29 133.7 155 49.0
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 3.8e-29 132.9 134 56.7
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 3.8e-29 132.9 140 57.9
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 3.8e-29 132.9 137 54.7
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.9e-29 132.5 174 45.4
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 6.5e-29 132.1 126 57.1
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 6.5e-29 132.1 162 52.5
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 8.4e-29 131.7 127 58.3
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 1.1e-28 131.3 140 53.6
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.4e-28 131.0 136 55.9
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.9e-28 130.6 159 50.9
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 3.2e-28 129.8 128 59.4
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.2e-28 129.8 133 55.6
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 7.1e-28 128.6 107 65.4
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.6e-27 127.5 140 50.0
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.6e-27 127.5 156 50.6
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 2.1e-27 127.1 128 58.6
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 3.5e-27 126.3 135 51.9
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 6.0e-27 125.6 145 51.0
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 6.0e-27 125.6 143 54.5
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 7.9e-27 125.2 144 54.2
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.0e-26 124.8 134 51.5
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.8e-26 124.0 134 56.7
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.8e-26 124.0 134 53.7
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.8e-26 124.0 74 79.7
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.9e-26 122.9 133 51.1
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 3.9e-26 122.9 138 52.2
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 3.9e-26 122.9 131 55.7
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 5.1e-26 122.5 86 69.8
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 5.1e-26 122.5 77 76.6
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 5.1e-26 122.5 98 68.4
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 6.7e-26 122.1 98 65.3
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 6.7e-26 122.1 134 53.0
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 6.7e-26 122.1 138 54.3
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 6.7e-26 122.1 103 65.0
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.3e-25 119.8 97 63.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.3e-25 119.8 136 54.4
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 5.7e-25 119.0 97 64.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 7.4e-25 118.6 81 72.8
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.8e-24 116.7 80 72.5
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.1e-23 114.8 97 61.9
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.8e-23 114.0 109 60.6
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 2.4e-23 113.6 72 73.6
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 6.9e-23 112.1 73 79.5
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 9.0e-23 111.7 96 64.6
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.2e-22 111.3 127 53.5
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.2e-22 111.3 139 51.1
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.5e-22 110.9 127 53.5
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 7.6e-22 108.6 121 53.7
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 3.8e-21 106.3 133 50.4
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 5.0e-21 105.9 75 69.3
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.1e-20 104.8 123 52.0
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.1e-20 104.8 135 48.1
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 3.9e-18 96.3 72 62.5
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.5e-17 93.6 72 62.5
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 4.3e-17 92.8 72 62.5
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 5.7e-17 92.4 63 69.8
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 7.4e-17 92.0 72 61.1
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.3e-16 91.3 72 58.3
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 3.0e-10 70.1 62 56.5
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 7.4e-09 65.5 142 32.4
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 9.7e-09 65.1 153 31.4
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 3.1e-07 60.1 45 73.3


User provided reference genes

Program Settings