Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.3e-120 436.4 226 100.0
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.8e-48 196.8 200 56.0
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 4.8e-46 188.7 199 54.3
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 6.5e-43 178.3 196 50.5
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 6.5e-43 178.3 199 49.2
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 6.5e-43 178.3 132 70.5
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 6.5e-43 178.3 196 50.5
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 6.5e-43 178.3 132 70.5
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 6.5e-43 178.3 196 50.5
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 6.5e-43 178.3 132 70.5
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 6.5e-43 178.3 199 49.2
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 1.4e-42 177.2 200 50.0
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 1.9e-42 176.8 199 50.3
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 2.5e-39 166.4 200 47.5
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 3.7e-38 162.5 200 48.0
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 8.2e-38 161.4 199 47.7
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 1.4e-32 144.1 197 41.6
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 6.3e-30 135.2 100 71.0
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-29 134.4 100 70.0
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-29 134.4 100 70.0
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 1.4e-29 134.0 100 71.0
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 5.3e-29 132.1 100 71.0
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 7.0e-29 131.7 178 45.5
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 1.2e-28 131.0 100 70.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 1.2e-28 131.0 100 70.0
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.2e-25 120.9 115 57.4
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 6.1e-25 118.6 88 70.5
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 6.1e-25 118.6 100 66.0
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 1.0e-24 117.9 103 60.2
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-24 117.9 103 60.2
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.1e-23 114.4 198 35.9
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 5.7e-23 112.1 101 57.4
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 7.5e-23 111.7 198 35.4
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 7.5e-23 111.7 188 36.7
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 3.7e-22 109.4 198 34.8
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 7.0e-21 105.1 197 34.5
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.2e-20 104.4 90 61.1
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.2e-20 104.4 191 34.6
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 2.0e-20 103.6 198 34.8
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 4.5e-20 102.4 65 75.4
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.0e-19 101.3 196 34.2
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 2.2e-19 100.1 177 36.7
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 2.9e-19 99.8 195 31.8
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 8.5e-19 98.2 181 32.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 8.5e-19 98.2 198 33.8
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.9e-18 97.1 176 34.7
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 3.2e-18 96.3 176 34.7
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 7.2e-18 95.1 191 33.0
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 9.4e-18 94.7 186 35.5
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.2e-17 94.4 183 32.2
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 1.6e-17 94.0 72 68.1
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.6e-17 94.0 178 37.1
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.6e-17 94.0 198 33.8
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 2.1e-17 93.6 182 34.6
C09p41690 Brassica napus HOM05D005574 ORTHO05D022054 6.1e-17 92.0 51 86.3
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 6.1e-17 92.0 198 33.3
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 8.0e-17 91.7 198 33.8
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 8.0e-17 91.7 198 32.8
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.8e-16 90.5 198 33.8
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.8e-16 90.5 191 32.5
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 2.3e-16 90.1 198 34.3
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 2.3e-16 90.1 201 30.3
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.3e-16 90.1 186 32.8
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 2.3e-16 90.1 121 42.1
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 3.0e-16 89.7 197 32.5
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 3.0e-16 89.7 191 33.0
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.0e-16 89.4 198 33.3
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.2e-16 89.0 198 33.3
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.2e-16 89.0 198 33.3
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.2e-16 89.0 198 33.3
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 5.2e-16 89.0 203 31.0
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 6.8e-16 88.6 181 31.5
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 8.8e-16 88.2 185 33.0
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.5e-15 87.4 200 29.5
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 2.6e-15 86.7 201 28.9
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 3.4e-15 86.3 191 30.9
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 3.4e-15 86.3 197 30.5
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 4.4e-15 85.9 118 37.3
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 5.7e-15 85.5 117 37.6
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 5.7e-15 85.5 118 41.5
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 7.5e-15 85.1 199 31.2
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 9.8e-15 84.7 172 33.1
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 2.8e-14 83.2 118 40.7
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.7e-14 82.8 118 39.8
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 3.7e-14 82.8 118 41.5
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 4.8e-14 82.4 128 39.8
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 6.3e-14 82.0 184 32.6
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 6.3e-14 82.0 200 32.0
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 8.3e-14 81.6 148 35.8
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 1.4e-13 80.9 200 29.0
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.4e-13 80.9 188 30.9
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.8e-13 80.5 131 37.4
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 2.4e-13 80.1 117 38.5
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.4e-13 80.1 117 38.5
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.4e-13 80.1 192 31.2
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.6e-12 77.4 198 27.3
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 4.5e-12 75.9 152 34.2
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 4.5e-12 75.9 118 40.7
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 5.9e-12 75.5 117 39.3
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 5.9e-12 75.5 120 36.7
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.0e-11 74.7 161 31.1
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 1.3e-11 74.3 100 47.0
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.3e-11 74.3 117 37.6
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 1.7e-11 73.9 178 31.5
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 2.2e-11 73.6 181 34.8
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 2.2e-11 73.6 187 29.9
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 3.8e-11 72.8 196 30.1
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 3.8e-11 72.8 118 37.3
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 6.5e-11 72.0 199 28.1
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 8.5e-11 71.6 157 31.8
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 8.5e-11 71.6 117 35.9
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 1.5e-10 70.9 181 28.7
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 1.9e-10 70.5 117 37.6
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.9e-10 70.5 100 40.0
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.5e-10 70.1 117 36.8
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 4.2e-10 69.3 50 58.0
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.5e-10 68.9 201 27.4
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.2e-09 67.8 117 34.2
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.6e-09 67.4 123 35.8
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.1e-09 67.0 98 40.8
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.7e-09 66.6 50 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.8e-08 63.9 111 31.5
BolC1t03555H Brassica oleracea HOM05D005574 ORTHO05D007102 2.3e-08 63.5 37 83.8
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 4.0e-08 62.8 117 35.0
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 1.5e-07 60.8 104 35.6
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 4.4e-07 59.3 79 39.2
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 5.7e-07 58.9 130 32.3
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.2e-06 57.0 124 31.5
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 8.3e-06 55.1 190 22.6


User provided reference genes

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