Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33697 Brassica carinata HOM05D000335 ORTHO05D001251 6.5e-30 133.3 61 100.0
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 1.0e-22 109.4 65 78.5
BraA06t23618Z Brassica rapa HOM05D000335 ORTHO05D001251 1.0e-22 109.4 65 78.5
Sp1g35820 Schrenkiella parvula HOM05D000335 ORTHO05D001251 2.2e-22 108.2 65 78.5
BcaB07g33708 Brassica carinata HOM05D000335 ORTHO05D001251 5.0e-22 107.1 65 76.9
BcaC08g43089 Brassica carinata HOM05D000335 ORTHO05D001251 5.0e-22 107.1 65 76.9
C06p03480 Brassica napus HOM05D000335 ORTHO05D001251 5.0e-22 107.1 65 76.9
BolC6t35488H Brassica oleracea HOM05D000335 ORTHO05D001251 1.9e-21 105.1 65 75.4
Thhalv10012211m.g Eutrema salsugineum HOM05D000335 ORTHO05D001251 5.5e-21 103.6 65 73.8
AL1G55732 Arabidopsis lyrata HOM05D000335 ORTHO05D001251 1.3e-19 99.0 64 73.4
AT1G48910 Arabidopsis thaliana HOM05D000335 ORTHO05D001251 2.3e-19 98.2 65 70.8
Carub.0001s3805 Capsella rubella HOM05D000335 ORTHO05D001251 6.7e-19 96.7 65 69.2
CARHR038900 Cardamine hirsuta HOM05D000335 ORTHO05D001251 3.3e-18 94.4 65 66.2
Aa31LG10G5010 Aethionema arabicum HOM05D000335 ORTHO05D001251 1.2e-12 75.9 65 58.5
THA.LOC104820418 Tarenaya hassleriana HOM05D000335 ORTHO05D001251 1.6e-12 75.5 65 55.4
Gohir.A11G056900 Gossypium hirsutum HOM05D000335 ORTHO05D001251 1.3e-09 65.9 63 44.4
Gohir.D11G061000 Gossypium hirsutum HOM05D000335 ORTHO05D001251 1.3e-09 65.9 63 44.4
Gorai.007G065700 Gossypium raimondii HOM05D000335 ORTHO05D001251 1.3e-09 65.9 63 44.4
PSO541G5289 Papaver somniferum HOM05D000335 ORTHO05D001251 2.2e-09 65.1 65 44.6
QL06p028902 Quercus lobata HOM05D000335 ORTHO05D001251 2.2e-09 65.1 63 47.6
ClCG02G000550 Citrullus lanatus HOM05D000335 ORTHO05D001251 3.7e-09 64.3 65 46.2
Lj1g0003761 Lotus japonicus HOM05D000335 ORTHO05D001251 8.2e-09 63.2 64 45.3
Thecc.01G129900 Theobroma cacao HOM05D000335 ORTHO05D001251 1.4e-08 62.4 64 40.6
COL.COLO4_35710 Corchorus olitorius HOM05D000335 ORTHO05D001251 1.8e-08 62.0 63 41.3
Haze_17594 Corylus avellana HOM05D000335 ORTHO05D001251 1.8e-08 62.0 67 44.8
Cfa018489 Carpinus fangiana HOM05D000335 ORTHO05D001251 2.4e-08 61.6 67 44.8
Lj6g0003591 Lotus japonicus HOM05D000335 ORTHO05D001251 2.4e-08 61.6 64 45.3
MD15G1274600 Malus domestica HOM05D000335 ORTHO05D001251 4.1e-08 60.8 64 45.3
Lj1g0009915 Lotus japonicus HOM05D000335 ORTHO05D001251 5.3e-08 60.5 64 46.9
QL02p006313 Quercus lobata HOM05D000335 ORTHO05D001251 5.3e-08 60.5 63 44.4
QL02p006323 Quercus lobata HOM05D000335 ORTHO05D001251 5.3e-08 60.5 63 44.4
Cfa002882 Carpinus fangiana HOM05D000335 ORTHO05D001251 6.9e-08 60.1 64 42.2
Psat5g220680 Pisum sativum HOM05D000335 ORTHO05D001251 6.9e-08 60.1 64 45.3
Thecc.01G130000 Theobroma cacao HOM05D000335 ORTHO05D001251 6.9e-08 60.1 64 40.6
QL02p006336 Quercus lobata HOM05D000335 ORTHO05D001251 1.2e-07 59.3 63 42.9
Glyma.06G152700 Glycine max HOM05D000335 ORTHO05D001251 1.5e-07 58.9 64 40.6
PSO541G2640 Papaver somniferum HOM05D000335 ORTHO05D001251 1.5e-07 58.9 64 42.2
Sp1g18970 Schrenkiella parvula HOM05D000335 ORTHO05D001251 1.5e-07 58.9 65 47.7
Duzib264G0841 Durio zibethinus HOM05D000335 ORTHO05D001251 2.0e-07 58.5 63 39.7
Glyma.06G120700 Glycine max HOM05D000335 ORTHO05D001251 2.6e-07 58.2 65 46.2
Psat5g060240 Pisum sativum HOM05D000335 ORTHO05D001251 2.6e-07 58.2 64 42.2
Psat5g062240 Pisum sativum HOM05D000335 ORTHO05D001251 2.6e-07 58.2 64 42.2
Psat5g220720 Pisum sativum HOM05D000335 ORTHO05D001251 2.6e-07 58.2 64 43.8
MD10G1010100 Malus domestica HOM05D000335 ORTHO05D001251 3.4e-07 57.8 64 40.6
MD10G1010200 Malus domestica HOM05D000335 ORTHO05D001251 3.4e-07 57.8 64 40.6
Thhalv10009764m.g Eutrema salsugineum HOM05D000335 ORTHO05D001251 4.5e-07 57.4 62 48.4
TPR.G32275 Trifolium pratense HOM05D000335 ORTHO05D001251 5.9e-07 57.0 67 41.8
DCAR_012429 Daucus carota HOM05D000335 ORTHO05D001251 7.7e-07 56.6 65 44.6
Cc10_g13180 Coffea canephora HOM05D000335 ORTHO05D001251 1.0e-06 56.2 64 43.8
Aqoxy5G01946 Aquilegia oxysepala HOM05D000335 ORTHO05D001251 1.7e-06 55.5 63 41.3
Psat5g060200 Pisum sativum HOM05D000335 ORTHO05D001251 2.2e-06 55.1 64 40.6
Peaxi162Scf00047g00847 Petunia axillaris HOM05D000335 ORTHO05D001251 2.9e-06 54.7 64 39.1
Psat5g220640 Pisum sativum HOM05D000335 ORTHO05D001251 2.9e-06 54.7 64 42.2
Sc10g0002330 Simmondsia chinensis HOM05D000335 ORTHO05D001251 2.9e-06 54.7 63 42.9
Aqoxy6G00352 Aquilegia oxysepala HOM05D000335 ORTHO05D001251 3.8e-06 54.3 59 37.3
CDE06G2362 Ceratophyllum demersum HOM05D000335 ORTHO05D001251 3.8e-06 54.3 63 41.3
Eucgr.L00638 Eucalyptus grandis HOM05D000335 ORTHO05D001251 3.8e-06 54.3 64 40.6
Actinidia15175 Actinidia chinensis HOM05D000335 ORTHO05D001251 5.0e-06 53.9 58 41.4
arahy.Tifrunner.gnm1.ann1.CLFR23 Arachis hypogaea HOM05D000335 ORTHO05D001251 5.0e-06 53.9 64 39.1
CANSAT01G1288 Cannabis sativa HOM05D000335 ORTHO05D001251 5.0e-06 53.9 68 44.1
FvH4_4g17980 Fragaria vesca HOM05D000335 ORTHO05D001251 5.0e-06 53.9 69 37.7
FAN12G1021 Fragaria x ananassa HOM05D000335 ORTHO05D001251 5.0e-06 53.9 69 37.7
FAN12G1331 Fragaria x ananassa HOM05D000335 ORTHO05D001251 5.0e-06 53.9 69 37.7
Nn3g21282 Nelumbo nucifera HOM05D000335 ORTHO05D001251 5.0e-06 53.9 64 43.8
Atru.chr5.1279 Acer truncatum HOM05D000335 ORTHO05D001251 6.5e-06 53.5 64 42.2
C05p20290 Brassica napus HOM05D000335 ORTHO05D001251 8.5e-06 53.1 42 54.8
Hma1.2p1_0476F.1_g160930 Hydrangea macrophylla HOM05D000335 ORTHO05D000459 8.5e-06 53.1 62 41.9
Solyc09g074430.4 Solanum lycopersicum HOM05D000335 ORTHO05D001251 8.5e-06 53.1 64 42.2
TWI60G0790 Tripterygium wilfordii HOM05D000335 ORTHO05D001251 8.5e-06 53.1 43 51.2


User provided reference genes

Program Settings