Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33676 Brassica carinata HOM05D005982 ORTHO05D007891 2.7e-52 208.4 105 100.0
BcaB05g24111 Brassica carinata HOM05D005982 ORTHO05D007891 1.2e-23 113.2 60 95.0
A02p13190 Brassica napus HOM05D005982 ORTHO05D007891 2.7e-23 112.1 60 93.3
C02p21350 Brassica napus HOM05D005982 ORTHO05D007891 2.7e-23 112.1 60 93.3
BraA02t06375Z Brassica rapa HOM05D005982 ORTHO05D007891 2.7e-23 112.1 60 93.3
BcaC03g14702 Brassica carinata HOM05D005982 ORTHO05D007891 3.5e-23 111.7 60 91.7
BolC2t08274H Brassica oleracea HOM05D005982 ORTHO05D007891 3.5e-23 111.7 60 91.7
Aa31LG2G2440 Aethionema arabicum HOM05D005982 ORTHO05D007891 4.2e-21 104.8 60 91.7
CAN.G217.3 Capsicum annuum HOM05D005982 ORTHO05D007891 4.2e-21 104.8 60 88.3
CSS0009322 Camellia sinensis var. sinensis HOM05D005982 ORTHO05D007891 7.2e-21 104.0 60 90.0
AL2G22080 Arabidopsis lyrata HOM05D005982 ORTHO05D007891 9.4e-21 103.6 60 90.0
AT1G65410 Arabidopsis thaliana HOM05D005982 ORTHO05D007891 9.4e-21 103.6 60 90.0
Peaxi162Scf00976g00029 Petunia axillaris HOM05D005982 ORTHO05D007891 9.4e-21 103.6 60 86.7
Sp7g05710 Schrenkiella parvula HOM05D005982 ORTHO05D007891 9.4e-21 103.6 60 88.3
PGR031G2177 Punica granatum HOM05D005982 ORTHO05D007891 1.2e-20 103.2 60 85.0
Dinv04347 Davidia involucrata HOM05D005982 ORTHO05D007891 1.6e-20 102.8 64 82.8
Peaxi162Scf00006g04218 Petunia axillaris HOM05D005982 ORTHO05D007891 1.6e-20 102.8 60 85.0
Solyc04g056650.4 Solanum lycopersicum HOM05D005982 ORTHO05D007891 1.6e-20 102.8 60 86.7
Sopen04g025570 Solanum pennellii HOM05D005982 ORTHO05D007891 1.6e-20 102.8 60 86.7
Cpa.g.sc123.7 Carica papaya HOM05D005982 ORTHO05D007891 2.1e-20 102.4 60 88.3
Thhalv10018868m.g Eutrema salsugineum HOM05D005982 ORTHO05D007891 2.1e-20 102.4 60 90.0
Hma1.2p1_0171F.1_g075780 Hydrangea macrophylla HOM05D005982 ORTHO05D007891 2.1e-20 102.4 60 88.3
Carub.0002s1112 Capsella rubella HOM05D005982 ORTHO05D007891 2.7e-20 102.1 60 88.3
CARHR057060 Cardamine hirsuta HOM05D005982 ORTHO05D007891 2.7e-20 102.1 60 88.3
Sp5g20140 Schrenkiella parvula HOM05D005982 ORTHO05D007891 2.7e-20 102.1 71 76.1
SGA_v2.0_scaffold105G30407 Striga asiatica HOM05D005982 ORTHO05D007891 3.6e-20 101.7 60 86.7
SGA_v2.0_scaffold340G49298 Striga asiatica HOM05D005982 ORTHO05D007891 3.6e-20 101.7 60 86.7
THA.LOC104821984 Tarenaya hassleriana HOM05D005982 ORTHO05D007891 3.6e-20 101.7 60 88.3
Zm00001eb306900 Zea mays HOM05D005982 ORTHO05D007891 3.6e-20 101.7 60 85.0
Hund07330 Selenicereus undatus HOM05D005982 ORTHO05D007891 4.7e-20 101.3 60 85.0
Atru.chr12.2111 Acer truncatum HOM05D005982 ORTHO05D007891 6.1e-20 100.9 60 86.7
MSTRG.321 Avicennia marina HOM05D005982 ORTHO05D007891 6.1e-20 100.9 60 86.7
EL10Ac4g09983 Beta vulgaris HOM05D005982 ORTHO05D007891 6.1e-20 100.9 64 78.1
Oeu062057.1 Olea europaea HOM05D005982 ORTHO05D007891 6.1e-20 100.9 60 85.0
CiPaw.07G078800 Carya illinoinensis HOM05D005982 ORTHO05D007891 8.0e-20 100.5 59 88.1
Os03g0670100 Oryza sativa ssp. japonica HOM05D005982 ORTHO05D007891 8.0e-20 100.5 60 85.0
GSVIVG01019131001 Vitis vinifera HOM05D005982 ORTHO05D007891 1.0e-19 100.1 64 81.2
Migut.F01882 Erythranthe guttata HOM05D005982 ORTHO05D007891 1.4e-19 99.8 71 73.2
Medtr7g079540 Medicago truncatula HOM05D005982 ORTHO05D007891 1.4e-19 99.8 60 85.0
Nn4g26684 Nelumbo nucifera HOM05D005982 ORTHO05D007891 1.4e-19 99.8 60 85.0
ECA240G3075 Erigeron canadensis HOM05D005982 ORTHO05D007891 1.8e-19 99.4 60 85.0
Cc09_g03440 Coffea canephora HOM05D005982 ORTHO05D007891 3.0e-19 98.6 56 83.9
Rhsim09G0010600 Rhododendron simsii HOM05D005982 ORTHO05D007891 4.0e-19 98.2 58 87.9
Actinidia27111 Actinidia chinensis HOM05D005982 ORTHO05D007891 6.8e-19 97.4 59 84.7
ATR0824G061 Amborella trichopoda HOM05D005982 ORTHO05D007891 6.8e-19 97.4 60 83.3
Cfa006274 Carpinus fangiana HOM05D005982 ORTHO05D007891 6.8e-19 97.4 60 81.7
Sabra14G0103400 Salix brachista HOM05D005982 ORTHO05D007891 6.8e-19 97.4 60 85.0
Ca_07966_v3 Cicer arietinum L. HOM05D005982 ORTHO05D007891 8.8e-19 97.1 60 81.7
Sc09g0001550 Simmondsia chinensis HOM05D005982 ORTHO05D007891 8.8e-19 97.1 60 83.3
Aqoxy2G03151 Aquilegia oxysepala HOM05D005982 ORTHO05D007891 1.2e-18 96.7 61 83.6
DCAR_001501 Daucus carota HOM05D005982 ORTHO05D007891 1.2e-18 96.7 60 83.3
Eucgr.B01388 Eucalyptus grandis HOM05D005982 ORTHO05D007891 1.2e-18 96.7 60 83.3
Lalb_Chr03g0038371 Lupinus albus HOM05D005982 ORTHO05D007891 1.2e-18 96.7 60 83.3
Manes.09G184400 Manihot esculenta HOM05D005982 ORTHO05D007891 1.2e-18 96.7 59 81.4
TPR.G28447 Trifolium pratense HOM05D005982 ORTHO05D007891 1.2e-18 96.7 60 83.3
Nitab4.5_0000946g0030 Nicotiana tabacum HOM05D005982 ORTHO05D007891 1.5e-18 96.3 81 66.7
Potri.002G212701 Populus trichocarpa HOM05D005982 ORTHO05D007891 1.5e-18 96.3 64 76.6
TWI75G0896 Tripterygium wilfordii HOM05D005982 ORTHO05D007891 1.5e-18 96.3 55 87.3
COL.COLO4_27407 Corchorus olitorius HOM05D005982 ORTHO05D007891 2.0e-18 95.9 60 85.0
Haze_04537 Corylus avellana HOM05D005982 ORTHO05D007891 2.0e-18 95.9 58 84.5
Lalb_Chr19g0126741 Lupinus albus HOM05D005982 ORTHO05D007891 2.0e-18 95.9 60 81.7
Psat3g104760 Pisum sativum HOM05D005982 ORTHO05D007891 2.0e-18 95.9 60 81.7
vmacro00703 Vaccinium macrocarpon HOM05D005982 ORTHO05D007891 2.0e-18 95.9 54 87.0
CANSAT54G1987 Cannabis sativa HOM05D005982 ORTHO05D007891 2.6e-18 95.5 60 81.7
CDE09G1326 Ceratophyllum demersum HOM05D005982 ORTHO05D007891 2.6e-18 95.5 60 81.7
Glyma.18G240700 Glycine max HOM05D005982 ORTHO05D007891 2.6e-18 95.5 60 83.3
HanXRQChr13g0409591 Helianthus annuus HOM05D005982 ORTHO05D007891 2.6e-18 95.5 60 81.7
MD04G1243700 Malus domestica HOM05D005982 ORTHO05D007891 2.6e-18 95.5 60 81.7
Phvul.008G055500 Phaseolus vulgaris HOM05D005982 ORTHO05D007891 2.6e-18 95.5 60 83.3
VMungo1383G2145 Vigna mungo HOM05D005982 ORTHO05D007891 2.6e-18 95.5 60 83.3
ClCG03G010900 Citrullus lanatus HOM05D005982 ORTHO05D007891 3.4e-18 95.1 60 81.7
MELO3C010074.2 Cucumis melo HOM05D005982 ORTHO05D007891 3.4e-18 95.1 60 81.7
CsaV3_1G044650 Cucumis sativus L. HOM05D005982 ORTHO05D007891 3.4e-18 95.1 60 81.7
MD12G1259300 Malus domestica HOM05D005982 ORTHO05D007891 3.4e-18 95.1 60 81.7
Manes.08G104700 Manihot esculenta HOM05D005982 ORTHO05D007891 3.4e-18 95.1 60 81.7
Potri.014G137000 Populus trichocarpa HOM05D005982 ORTHO05D007891 3.4e-18 95.1 55 83.6
SalBow6G2130 Salvia bowleyana HOM05D005982 ORTHO05D007891 3.4e-18 95.1 60 83.3
HPP92_020752 Vanilla planifolia HOM05D005982 ORTHO05D007891 3.4e-18 95.1 63 77.8
Lj7A713G54 Lonicera japonica HOM05D005982 ORTHO05D007891 4.4e-18 94.7 60 81.7
Sed0000119 Sechium edule HOM05D005982 ORTHO05D007891 4.4e-18 94.7 60 80.0
AUR62000331 Chenopodium quinoa HOM05D005982 ORTHO05D007891 5.7e-18 94.4 59 81.4
AUR62006673 Chenopodium quinoa HOM05D005982 ORTHO05D007891 5.7e-18 94.4 59 81.4
TAR362G0600 Trochodendron aralioides HOM05D005982 ORTHO05D007891 5.7e-18 94.4 60 83.3
Lsat_1_v5_gn_3_109720 Lactuca sativa HOM05D005982 ORTHO05D007891 7.5e-18 94.0 60 83.3
Duzib128G1048 Durio zibethinus HOM05D005982 ORTHO05D007891 1.3e-17 93.2 60 83.3
arahy.Tifrunner.gnm1.ann1.9114DU Arachis hypogaea HOM05D005982 ORTHO05D007891 1.7e-17 92.8 60 78.3
arahy.Tifrunner.gnm1.ann1.9D9UM2 Arachis hypogaea HOM05D005982 ORTHO05D007891 1.7e-17 92.8 60 78.3
Gohir.D04G026600 Gossypium hirsutum HOM05D005982 ORTHO05D007891 1.7e-17 92.8 60 81.7
HanXRQChr03g0078051 Helianthus annuus HOM05D005982 ORTHO05D007891 2.2e-17 92.4 59 81.4
MSTRG.8220 Avicennia marina HOM05D005982 ORTHO05D007891 2.8e-17 92.0 54 85.2
Ciclev10012081m.g Citrus clementina HOM05D005982 ORTHO05D007891 3.7e-17 91.7 54 83.3
Gohir.A08G224566 Gossypium hirsutum HOM05D005982 ORTHO05D007891 3.7e-17 91.7 60 81.7
Gohir.D08G244900 Gossypium hirsutum HOM05D005982 ORTHO05D007891 3.7e-17 91.7 60 81.7
Gorai.004G261400 Gossypium raimondii HOM05D005982 ORTHO05D007891 3.7e-17 91.7 60 81.7
PSO017G3475 Papaver somniferum HOM05D005982 ORTHO05D007891 3.7e-17 91.7 60 78.3
PSO675G2550 Papaver somniferum HOM05D005982 ORTHO05D007891 3.7e-17 91.7 60 78.3
CDE02G2764 Ceratophyllum demersum HOM05D005982 ORTHO05D007891 4.8e-17 91.3 53 84.9
FAN05G0974 Fragaria x ananassa HOM05D005982 ORTHO05D007891 4.8e-17 91.3 54 85.2
Glyma.09G251900 Glycine max HOM05D005982 ORTHO05D007891 4.8e-17 91.3 60 80.0
Prupe.6G359900 Prunus persica HOM05D005982 ORTHO05D007891 1.4e-16 89.7 50 90.0
RcHm_v2.0_Chr3g0448111 Rosa chinensis HOM05D005982 ORTHO05D007891 1.4e-16 89.7 50 90.0
FvH4_6g00670 Fragaria vesca HOM05D005982 ORTHO05D007891 2.4e-16 89.0 54 83.3
FAN14G5963 Fragaria x ananassa HOM05D005982 ORTHO05D007891 2.4e-16 89.0 54 83.3
SHI13732 Sapria himalayana HOM05D005982 ORTHO05D007891 3.1e-16 88.6 63 71.4
Thecc.05G201800 Theobroma cacao HOM05D005982 ORTHO05D007891 4.1e-16 88.2 53 84.9
FAN09G4525 Fragaria x ananassa HOM05D005982 ORTHO05D007891 5.4e-16 87.8 54 81.5
SMO119G0460 Selaginella moellendorffii HOM05D005982 ORTHO05D007891 5.9e-15 84.3 60 71.7
Lj1g0016626 Lotus japonicus HOM05D005982 ORTHO05D007891 2.2e-14 82.4 56 76.8
Mapoly0149s0025 Marchantia polymorpha HOM05D005982 ORTHO05D007891 2.5e-13 79.0 64 64.1
CBR_g23946 Chara braunii HOM05D005982 ORTHO05D007891 1.6e-12 76.3 61 67.2
Pp3c20_17770 Physcomitrium patens HOM05D005982 ORTHO05D007891 1.6e-12 76.3 60 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2486 Anthoceros agrestis HOM05D005982 ORTHO05D007891 2.1e-12 75.9 61 68.9
Pp3c24_4350 Physcomitrium patens HOM05D005982 ORTHO05D007891 6.1e-12 74.3 56 67.9
BcaB05g24613 Brassica carinata HOM05D005982 ORTHO05D094193 3.4e-10 68.6 37 91.9
Cre16.g658526 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D007891 1.3e-09 66.6 58 56.9
unitig_62.g23780 Utricularia gibba HOM05D005982 ORTHO05D007891 8.3e-09 63.9 38 84.2
QL01p045598 Quercus lobata HOM05D005982 ORTHO05D007891 1.1e-08 63.5 37 86.5
MCO07G748 Micromonas commoda HOM05D005982 ORTHO05D007891 7.0e-08 60.8 65 50.8
AUR62000328 Chenopodium quinoa HOM05D000030 ORTHO05D000009 5.0e-06 54.7 48 60.4


User provided reference genes

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