Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1702.2 824 100.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1643.6 825 96.6
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1634.8 825 96.1
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1630.2 828 96.0
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1629.4 828 96.0
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1625.5 829 95.9
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1604.0 839 93.1
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1572.0 825 91.9
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1571.6 839 90.9
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1558.9 839 90.5
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1555.8 839 90.0
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1545.0 841 89.5
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1543.1 835 90.4
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1439.5 839 84.9
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1352.0 839 78.7
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1212.2 830 70.0
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1209.1 842 70.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1204.1 839 68.7
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1203.7 840 69.3
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1196.0 837 68.9
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1192.2 837 68.7
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1185.6 833 69.4
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1182.5 835 68.5
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1179.1 833 67.6
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1177.2 835 68.4
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1177.2 842 68.1
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1176.0 835 68.0
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1174.8 840 67.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1169.1 827 68.0
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1164.8 832 67.8
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1164.4 839 66.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1163.7 831 67.6
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1162.5 832 67.4
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1161.4 833 67.5
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1160.6 836 67.0
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1158.7 827 67.6
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1157.5 826 67.4
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1154.8 834 67.0
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1154.4 834 67.5
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1151.3 837 66.9
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1147.1 832 66.6
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1147.1 836 67.2
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1146.0 834 66.9
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 826 66.7
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 825 66.5
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 836 66.3
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1143.3 836 66.0
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1141.3 841 65.8
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1140.9 825 66.2
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1140.9 836 65.8
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 829 64.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 836 65.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1140.2 836 65.8
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1139.4 835 65.9
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1138.6 826 66.7
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1138.3 824 67.0
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 828 66.4
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1136.7 838 65.9
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1136.3 839 64.7
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 842 65.7
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 842 65.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 831 66.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1135.2 833 65.7
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1134.0 836 65.8
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1132.9 826 66.6
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1132.5 844 65.2
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1130.9 838 65.5
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1127.5 836 65.4
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1125.9 827 66.4
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1125.5 871 63.9
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1124.8 841 63.9
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1124.4 833 65.7
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1123.6 820 65.6
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1122.8 838 65.2
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1122.5 826 66.3
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1121.3 831 65.8
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1120.1 826 65.6
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1117.4 842 64.7
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1117.1 842 63.8
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1112.8 969 58.2
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1110.1 850 63.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1108.2 825 66.1
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1107.4 834 64.6
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1103.6 830 64.6
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1088.6 780 67.9
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.1e-310 1069.7 830 62.3
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.5e-310 1069.3 851 62.6
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 2.9e-306 1055.0 840 62.9
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 4.1e-305 1051.2 858 61.3
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 3.3e-302 1041.6 833 60.6
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.1e-300 1036.6 942 56.5
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 5.2e-300 1034.2 829 60.7
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.9e-294 1015.8 791 63.1
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 5.4e-289 997.7 760 63.4
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 8.7e-287 990.3 843 58.1
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 3.2e-281 971.8 830 57.5
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 3.9e-271 938.3 835 57.1
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 6.2e-269 931.0 669 67.4
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 4.8e-261 904.8 646 69.2
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 7.6e-251 870.9 834 53.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 5.3e-236 821.6 888 47.5
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-233 813.9 569 68.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.1e-230 803.9 853 48.1
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 2.6e-230 802.7 840 49.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 2.4e-204 716.5 819 48.0
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.9e-170 602.8 366 82.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 4.2e-164 582.8 463 62.9
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 5.4e-156 555.8 399 66.2
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.0e-141 508.4 403 61.8
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.1e-121 441.8 355 59.7
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.1e-111 408.7 266 72.6
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.7e-109 401.4 556 45.9
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 4.4e-105 386.7 865 33.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 2.0e-94 351.3 736 34.6
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 6.6e-93 346.3 1182 26.1
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 3.4e-89 334.0 566 40.3
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 3.4e-89 334.0 566 40.3
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.7e-88 330.5 226 70.4
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 7.0e-87 326.2 496 39.9
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.6e-86 325.1 294 52.0
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 7.3e-84 316.2 765 31.2
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.6e-83 313.9 267 59.2
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 1.8e-82 311.6 300 58.7
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 7.5e-81 306.2 194 80.9
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.0e-78 298.1 197 70.1
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 6.6e-77 293.1 195 71.8
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.1e-74 285.8 204 67.6
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 1.4e-71 275.4 239 61.1
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.5e-44 184.9 151 59.6
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.5e-38 164.5 127 64.6
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 7.9e-38 163.3 94 83.0
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 8.1e-35 153.3 120 67.5
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 8.4e-32 143.3 78 87.2
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.4e-32 143.3 102 62.7
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 5.7e-28 130.6 72 83.3
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.4e-26 125.9 79 72.2
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.4e-26 125.9 98 65.3
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.0e-26 123.2 70 81.4
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.5e-25 122.5 69 84.1
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 2.6e-25 121.7 98 57.1
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.6e-25 121.7 103 64.1
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 5.8e-25 120.6 151 48.3
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 3.0e-21 108.2 150 45.3
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 6.7e-21 107.1 209 35.4
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.5e-17 94.4 56 66.1
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.1e-14 85.5 65 61.5
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.0e-13 81.6 53 69.8
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 6.3e-11 73.9 59 50.8
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 2.9e-08 65.1 81 46.9
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 3.2e-07 61.6 338 21.9
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 7.2e-07 60.5 239 27.2
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 7.2e-07 60.5 239 27.2
CARHR090320 Cardamine hirsuta HOM05D000684 ORTHO05D000688 2.1e-06 58.9 270 24.1
Carub.0003s1500 Capsella rubella HOM05D000684 ORTHO05D000688 3.6e-06 58.2 270 24.1
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 3.6e-06 58.2 194 27.8
A05p18630 Brassica napus HOM05D000684 ORTHO05D000688 4.7e-06 57.8 267 24.0
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 6.1e-06 57.4 267 25.1
PGR031G1323 Punica granatum HOM05D002332 ORTHO05D002509 6.1e-06 57.4 130 28.5
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 6.1e-06 57.4 31 87.1


User provided reference genes

Program Settings