Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 8.8e-85 317.0 171 100.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 3.5e-65 251.9 172 82.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 6.6e-64 247.7 169 81.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 4.3e-63 245.0 172 79.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.2e-62 243.4 167 82.0
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 8.9e-61 237.3 166 79.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.2e-60 236.9 166 80.1
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-60 236.5 166 79.5
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-60 236.5 166 79.5
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.5e-60 236.5 166 79.5
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.0e-60 236.1 167 79.0
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 5.8e-60 234.6 166 78.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 7.5e-60 234.2 166 78.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 9.8e-60 233.8 172 75.0
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.7e-59 233.0 172 77.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.9e-59 232.3 166 77.7
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.2e-57 226.9 162 77.8
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 8.1e-54 214.2 167 74.3
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 8.1e-54 214.2 167 73.1
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.0e-53 211.8 171 70.8
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.2e-53 211.5 166 74.7
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.2e-52 210.3 166 74.7
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.2e-52 210.3 165 71.5
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-52 209.9 180 68.3
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-52 209.9 166 74.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.5e-52 209.9 170 68.8
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 3.4e-52 208.8 171 70.8
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 9.9e-52 207.2 166 70.5
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.7e-51 206.5 167 70.7
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.7e-51 206.5 169 71.0
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.7e-51 206.5 165 70.3
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.2e-51 206.1 166 69.9
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 2.2e-51 206.1 172 68.0
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.1e-50 203.8 167 70.1
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-50 203.4 163 70.6
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.9e-50 203.0 171 64.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 2.4e-50 202.6 166 71.1
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 3.2e-50 202.2 168 69.0
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 4.1e-50 201.8 166 70.5
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.4e-50 201.4 167 68.3
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.4e-50 201.4 164 69.5
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 7.1e-50 201.1 165 69.7
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 9.2e-50 200.7 169 70.4
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.6e-49 199.9 172 68.0
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.6e-49 199.9 172 67.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 2.1e-49 199.5 166 67.5
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.5e-49 198.7 166 71.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 4.6e-49 198.4 165 70.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 6.0e-49 198.0 165 66.7
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 6.0e-49 198.0 169 65.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 7.8e-49 197.6 163 62.6
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 7.8e-49 197.6 166 69.3
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.0e-48 197.2 167 67.1
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.3e-48 196.8 171 65.5
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.7e-48 196.4 166 69.9
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.7e-48 196.4 168 69.0
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.0e-48 195.7 168 67.9
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 5.1e-48 194.9 168 67.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 6.6e-48 194.5 167 65.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 8.6e-48 194.1 167 70.1
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.1e-47 193.7 168 67.9
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.5e-47 193.4 167 64.7
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.9e-47 193.0 168 66.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.9e-47 193.0 166 69.3
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 3.3e-47 192.2 164 70.1
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 4.3e-47 191.8 168 67.9
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 7.3e-47 191.0 172 63.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.6e-46 189.9 167 67.1
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.6e-46 189.9 168 66.1
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.6e-46 189.9 168 67.3
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.6e-46 188.7 173 63.0
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 6.2e-46 188.0 171 64.3
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 6.2e-46 188.0 166 66.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.1e-45 187.2 163 65.0
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.4e-45 186.8 163 66.3
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.8e-45 186.4 165 66.7
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.8e-45 186.4 167 67.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.4e-45 186.0 167 65.9
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 4.0e-45 185.3 167 64.7
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 4.0e-45 185.3 165 65.5
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.0e-45 185.3 120 73.3
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.2e-45 184.9 113 82.3
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 8.9e-45 184.1 167 64.1
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 8.9e-45 184.1 167 63.5
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 8.9e-45 184.1 164 66.5
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.5e-44 183.3 120 75.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.5e-44 183.3 168 58.9
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.6e-44 182.6 163 63.2
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.6e-44 182.6 121 73.6
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 4.4e-44 181.8 166 60.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 4.4e-44 181.8 164 64.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 5.8e-44 181.4 171 63.7
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 5.8e-44 181.4 193 59.1
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 9.9e-44 180.6 166 63.3
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 9.9e-44 180.6 168 64.9
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.2e-43 179.5 165 64.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.9e-43 179.1 178 55.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.9e-43 179.1 164 65.9
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 3.8e-43 178.7 170 65.3
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.9e-43 178.3 170 65.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 6.4e-43 177.9 164 63.4
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 8.4e-43 177.6 174 62.6
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 8.4e-43 177.6 162 65.4
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.4e-43 177.6 169 65.7
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.4e-43 177.6 171 60.2
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.4e-42 176.8 162 61.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.9e-42 176.4 165 64.8
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.9e-42 176.4 161 68.9
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.4e-42 176.0 201 51.7
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.4e-42 176.0 120 70.8
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 7.1e-42 174.5 262 46.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 9.3e-42 174.1 165 63.6
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.3e-40 170.2 164 62.2
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.6e-38 163.3 126 69.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-38 163.3 142 64.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.0e-36 156.4 171 56.1
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.0e-36 156.4 163 59.5
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-36 156.0 164 60.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 3.8e-35 152.1 174 50.0
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.1e-34 150.6 164 56.1
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.2e-33 147.1 101 67.3
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.7e-33 146.0 141 63.1
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.8e-33 144.4 167 52.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.1e-32 141.7 253 43.9
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 8.7e-32 141.0 161 54.0
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 6.2e-30 134.8 166 54.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-29 133.3 172 56.4
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.9e-27 125.2 110 64.5
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.7e-25 119.4 237 41.4
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 5.1e-24 115.2 120 60.8
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.3e-23 112.1 58 91.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.4e-21 106.3 114 62.3
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.9e-19 99.4 74 68.9
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 3.9e-16 89.0 64 67.2
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.8e-14 82.8 68 60.3
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 8.2e-14 81.3 148 33.8
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 5.3e-13 78.6 161 34.8
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 9.0e-13 77.8 74 71.6
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 6.5e-11 71.6 133 32.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.7e-09 66.2 47 66.0
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 9.7e-07 57.8 34 67.6


User provided reference genes

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