Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33617 Brassica carinata HOM05D000139 ORTHO05D090633 2.4e-50 201.8 98 100.0
BraA06t23442Z Brassica rapa HOM05D000139 ORTHO05D003082 8.2e-19 97.1 50 90.0
A06p02350 Brassica napus HOM05D000139 ORTHO05D003082 4.1e-18 94.7 50 88.0
BcaC08g43325 Brassica carinata HOM05D000139 ORTHO05D003082 1.6e-17 92.8 50 86.0
C06p06760 Brassica napus HOM05D000139 ORTHO05D003082 1.6e-17 92.8 50 86.0
BolC6t35785H Brassica oleracea HOM05D000139 ORTHO05D003082 1.6e-17 92.8 50 86.0
BcaB07g33621 Brassica carinata HOM05D000139 ORTHO05D003082 1.9e-15 85.9 61 72.1
AT1G51640 Arabidopsis thaliana HOM05D000139 ORTHO05D003082 6.1e-14 80.9 72 61.1
Sp1g38280 Schrenkiella parvula HOM05D000139 ORTHO05D003082 6.1e-14 80.9 68 63.2
C06p13170 Brassica napus HOM05D000139 ORTHO05D003082 1.8e-13 79.3 59 69.5
BolC6t36473H Brassica oleracea HOM05D000139 ORTHO05D003082 1.8e-13 79.3 59 69.5
Thhalv10012259m.g Eutrema salsugineum HOM05D000139 ORTHO05D003082 1.8e-13 79.3 56 75.0
Carub.0001s4050 Capsella rubella HOM05D000139 ORTHO05D003082 3.0e-13 78.6 69 59.4
BraA05t20852Z Brassica rapa HOM05D000139 ORTHO05D003082 6.8e-13 77.4 59 67.8
A05p19480 Brassica napus HOM05D000139 ORTHO05D003082 8.8e-13 77.0 59 67.8
AL1G59550 Arabidopsis lyrata HOM05D000139 ORTHO05D003082 2.6e-12 75.5 72 59.7
Thhalv10012056m.g Eutrema salsugineum HOM05D000139 ORTHO05D003082 3.4e-12 75.1 56 71.4
CARHR041800 Cardamine hirsuta HOM05D000139 ORTHO05D003082 2.8e-11 72.0 72 52.8
Aa31LG10G3140 Aethionema arabicum HOM05D000139 ORTHO05D003082 9.1e-10 67.0 51 64.7
arahy.Tifrunner.gnm1.ann1.V20YGC Arachis hypogaea HOM05D000139 ORTHO05D003082 1.1e-07 60.1 71 43.7
CsaV3_7G033810 Cucumis sativus L. HOM05D000139 ORTHO05D003082 1.1e-07 60.1 38 63.2
Sed0005048 Sechium edule HOM05D000139 ORTHO05D003082 1.5e-07 59.7 54 48.1
MELO3C024293.2 Cucumis melo HOM05D000139 ORTHO05D003082 2.5e-07 58.9 38 63.2
arahy.Tifrunner.gnm1.ann1.RFL709 Arachis hypogaea HOM05D000139 ORTHO05D003082 4.2e-07 58.2 70 42.9
Phvul.008G255500 Phaseolus vulgaris HOM05D000139 ORTHO05D003082 4.2e-07 58.2 33 72.7
Prupe.3G018000 Prunus persica HOM05D000139 ORTHO05D003082 4.2e-07 58.2 36 66.7
CiPaw.13G145800 Carya illinoinensis HOM05D000139 ORTHO05D003082 5.5e-07 57.8 39 61.5
THA.LOC104821597 Tarenaya hassleriana HOM05D000139 ORTHO05D003082 7.2e-07 57.4 58 51.7
VMungo0647G1698 Vigna mungo HOM05D000139 ORTHO05D003082 7.2e-07 57.4 59 49.2
Atru.chr1.2699 Acer truncatum HOM05D000139 ORTHO05D003082 9.4e-07 57.0 34 64.7
Ciclev10025071m.g Citrus clementina HOM05D000139 ORTHO05D003082 9.4e-07 57.0 33 69.7
Eucgr.F04014 Eucalyptus grandis HOM05D000139 ORTHO05D003082 9.4e-07 57.0 37 64.9
Glyma.08G222500 Glycine max HOM05D000139 ORTHO05D003082 9.4e-07 57.0 33 69.7
MD09G1159300 Malus domestica HOM05D000139 ORTHO05D003082 9.4e-07 57.0 36 66.7
Potri.008G008700 Populus trichocarpa HOM05D000139 ORTHO05D003082 9.4e-07 57.0 52 48.1
Glyma.07G004000 Glycine max HOM05D000139 ORTHO05D003082 1.2e-06 56.6 33 69.7
Cfa002129 Carpinus fangiana HOM05D000139 ORTHO05D003082 1.6e-06 56.2 50 50.0
Cpa.g.c36201.1 Carica papaya HOM05D000139 ORTHO05D003082 2.1e-06 55.8 62 43.5
MD17G1145500 Malus domestica HOM05D000139 ORTHO05D003082 2.1e-06 55.8 36 63.9
Potri.010G250500 Populus trichocarpa HOM05D000139 ORTHO05D003082 2.7e-06 55.5 51 47.1
RcHm_v2.0_Chr2g0150001 Rosa chinensis HOM05D000139 ORTHO05D003082 2.7e-06 55.5 55 47.3
Sabra10G0194800 Salix brachista HOM05D000139 ORTHO05D003082 2.7e-06 55.5 40 52.5
ClCG09G001520 Citrullus lanatus HOM05D000139 ORTHO05D003082 3.6e-06 55.1 38 55.3
FAN05G1860 Fragaria x ananassa HOM05D000139 ORTHO05D003082 3.6e-06 55.1 55 47.3
Haze_16310 Corylus avellana HOM05D000139 ORTHO05D003082 4.7e-06 54.7 55 45.5
QL05p083032 Quercus lobata HOM05D000139 ORTHO05D003082 4.7e-06 54.7 39 61.5
FAN02G3664 Fragaria x ananassa HOM05D000139 ORTHO05D003082 6.1e-06 54.3 55 47.3
FvH4_6g37240 Fragaria vesca HOM05D000139 ORTHO05D003082 8.0e-06 53.9 55 45.5
FAN14G4056 Fragaria x ananassa HOM05D000139 ORTHO05D003082 8.0e-06 53.9 55 45.5
Gorai.009G118500 Gossypium raimondii HOM05D000139 ORTHO05D003082 8.0e-06 53.9 49 49.0


User provided reference genes

Program Settings