Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33598 Brassica carinata HOM05D000336 ORTHO05D000593 2.7e-176 622.1 357 100.0
A02p30070 Brassica napus HOM05D000336 ORTHO05D000593 5.7e-110 401.7 357 72.8
BraA02t08026Z Brassica rapa HOM05D000336 ORTHO05D000593 5.7e-110 401.7 357 72.8
BcaC03g16863 Brassica carinata HOM05D000336 ORTHO05D000593 1.2e-104 384.0 293 74.4
C02p47570 Brassica napus HOM05D000336 ORTHO05D000593 3.0e-103 379.4 303 72.3
BolC2t10796H Brassica oleracea HOM05D000336 ORTHO05D000593 4.4e-102 375.6 309 70.6
AL8G11800 Arabidopsis lyrata HOM05D000336 ORTHO05D000593 6.4e-77 292.0 345 54.5
Thhalv10000859m.g Eutrema salsugineum HOM05D000336 ORTHO05D000593 4.1e-76 289.3 332 57.2
Carub.0008s0137 Capsella rubella HOM05D000336 ORTHO05D000593 5.9e-75 285.4 348 53.2
AT5G46550 Arabidopsis thaliana HOM05D000336 ORTHO05D000593 3.7e-61 239.6 347 48.7
Thhalv10011031m.g Eutrema salsugineum HOM05D000336 ORTHO05D000593 1.1e-44 184.9 299 47.5
Aa31LG9G6370 Aethionema arabicum HOM05D000336 ORTHO05D000593 1.2e-35 154.8 301 40.9
Gohir.A05G151900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 2.2e-29 134.0 342 34.5
Gohir.D05G154300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.1e-28 131.7 321 35.2
THA.LOC104806108 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 2.4e-28 130.6 325 36.0
Gohir.A10G032300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 2.1e-27 127.5 343 33.8
Duzib160G0793 Durio zibethinus HOM05D000336 ORTHO05D000593 3.5e-27 126.7 324 35.5
Eucgr.D00352 Eucalyptus grandis HOM05D000336 ORTHO05D000593 6.0e-27 125.9 318 32.7
CiPaw.09G131900 Carya illinoinensis HOM05D000336 ORTHO05D000593 5.1e-26 122.9 340 34.7
Atru.chr10.1457 Acer truncatum HOM05D000336 ORTHO05D000593 1.5e-25 121.3 323 35.0
Ciclev10014673m.g Citrus clementina HOM05D000336 ORTHO05D000593 1.5e-25 121.3 319 33.2
Gorai.011G034900 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.5e-25 121.3 347 32.6
Gorai.009G158600 Gossypium raimondii HOM05D000336 ORTHO05D000593 4.3e-25 119.8 317 33.8
COL.COLO4_22813 Corchorus olitorius HOM05D000336 ORTHO05D000593 2.1e-24 117.5 323 35.9
TWI73G1232 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 2.1e-24 117.5 350 32.3
MD05G1292900 Malus domestica HOM05D000336 ORTHO05D000593 6.2e-24 115.9 346 32.1
Thecc.06G159500 Theobroma cacao HOM05D000336 ORTHO05D000593 5.3e-23 112.8 324 33.6
Duzib235G1112 Durio zibethinus HOM05D000336 ORTHO05D000593 9.0e-23 112.1 327 33.3
MD10G1268800 Malus domestica HOM05D000336 ORTHO05D000593 1.5e-22 111.3 349 31.2
Gohir.D10G033100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 2.6e-22 110.5 353 32.3
Manes.15G116300 Manihot esculenta HOM05D000336 ORTHO05D000593 4.5e-22 109.8 354 31.4
RcHm_v2.0_Chr5g0012791 Rosa chinensis HOM05D000336 ORTHO05D000593 4.5e-22 109.8 352 31.8
Cfa010551 Carpinus fangiana HOM05D000336 ORTHO05D000593 7.6e-22 109.0 348 33.6
Lalb_Chr18g0055071 Lupinus albus HOM05D000336 ORTHO05D000593 7.6e-22 109.0 344 32.6
TWI09G0926 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 1.3e-21 108.2 350 31.1
Manes.17G063000 Manihot esculenta HOM05D000336 ORTHO05D000593 3.8e-21 106.7 378 32.0
arahy.Tifrunner.gnm1.ann1.73019P Arachis hypogaea HOM05D000336 ORTHO05D000593 6.5e-21 105.9 336 32.7
ClCG01G024140 Citrullus lanatus HOM05D000336 ORTHO05D000593 1.1e-20 105.1 328 32.9
Lalb_Chr20g0117661 Lupinus albus HOM05D000336 ORTHO05D000593 1.1e-20 105.1 345 31.6
arahy.Tifrunner.gnm1.ann1.973ZBX Arachis hypogaea HOM05D000336 ORTHO05D000593 1.4e-20 104.8 336 34.2
Haze_03479 Corylus avellana HOM05D000336 ORTHO05D000593 1.4e-20 104.8 333 32.7
Glyma.15G089700 Glycine max HOM05D000336 ORTHO05D000593 4.2e-20 103.2 338 32.2
THA.LOC104827741 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 4.2e-20 103.2 364 31.9
Glyma.13G222500 Glycine max HOM05D000336 ORTHO05D000593 1.6e-19 101.3 353 33.1
CsaV3_6G051270 Cucumis sativus L. HOM05D000336 ORTHO05D000593 3.5e-19 100.1 331 33.8
FAN21G2415 Fragaria x ananassa HOM05D000336 ORTHO05D000593 7.9e-19 99.0 343 32.1
Lalb_Chr12g0204811 Lupinus albus HOM05D000336 ORTHO05D000593 7.9e-19 99.0 321 32.1
QL05p052872 Quercus lobata HOM05D000336 ORTHO05D000593 1.0e-18 98.6 439 28.2
FvH4_3g06490 Fragaria vesca HOM05D000336 ORTHO05D000593 1.3e-18 98.2 342 31.6
Prupe.4G072500 Prunus persica HOM05D000336 ORTHO05D000593 1.8e-18 97.8 365 30.1
FAN11G0638 Fragaria x ananassa HOM05D000336 ORTHO05D000593 6.7e-18 95.9 342 31.0
Psat1g192520 Pisum sativum HOM05D000336 ORTHO05D000593 6.7e-18 95.9 317 31.2
Sabra11G0064100 Salix brachista HOM05D000336 ORTHO05D000593 6.7e-18 95.9 354 30.2
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 8.7e-18 95.5 340 32.1
Lj4g0028026 Lotus japonicus HOM05D000336 ORTHO05D000593 1.9e-17 94.4 303 32.0
CiPaw.10G098000 Carya illinoinensis HOM05D000336 ORTHO05D000593 3.3e-17 93.6 340 29.1
FAN16G2824 Fragaria x ananassa HOM05D000336 ORTHO05D000593 3.3e-17 93.6 346 31.8
Hma1.2p1_0012F.1_g007690 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 2.8e-16 90.5 396 28.3
Potri.011G077100 Populus trichocarpa HOM05D000336 ORTHO05D000593 2.8e-16 90.5 353 30.3
MELO3C007177.2 Cucumis melo HOM05D000336 ORTHO05D000593 3.7e-16 90.1 312 33.0
TPR.G20632 Trifolium pratense HOM05D000336 ORTHO05D000593 4.8e-16 89.7 307 30.9
Ca_00499_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 6.3e-16 89.4 309 31.1
Hma1.2p1_0015F.1_g010490 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 6.3e-16 89.4 348 29.0
Potri.001G355300 Populus trichocarpa HOM05D000336 ORTHO05D000593 6.3e-16 89.4 338 31.4
Phvul.006G168500 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 8.2e-16 89.0 330 28.5
Oeu039583.1 Olea europaea HOM05D000336 ORTHO05D000593 1.4e-15 88.2 302 29.8
Hma1.2p1_0015F.1_g010540 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 6.9e-15 85.9 348 28.4
Sp2g11370 Schrenkiella parvula HOM05D000336 ORTHO05D010803 6.9e-15 85.9 291 29.2
DCAR_003954 Daucus carota HOM05D000336 ORTHO05D000593 9.0e-15 85.5 391 26.6
VMungo0540G0396 Vigna mungo HOM05D000336 ORTHO05D000593 1.2e-14 85.1 334 29.6
Aqoxy4G03222 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 1.5e-14 84.7 304 30.6
Lj6g0004648 Lotus japonicus HOM05D000336 ORTHO05D000593 1.5e-14 84.7 310 30.3
CSS0035401 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 3.4e-14 83.6 366 29.8
GSVIVG01021322001 Vitis vinifera HOM05D000336 ORTHO05D000593 7.6e-14 82.4 413 26.9
Lalb_Chr13g0295421 Lupinus albus HOM05D000336 ORTHO05D000593 1.3e-13 81.6 343 29.2
Medtr2g018270 Medicago truncatula HOM05D000336 ORTHO05D000593 1.3e-13 81.6 318 30.8
Actinidia39543 Actinidia chinensis HOM05D000336 ORTHO05D000593 1.7e-13 81.3 469 27.3
Hma1.2p1_0015F.1_g010470 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 2.2e-13 80.9 389 27.5
Dinv01258 Davidia involucrata HOM05D000336 ORTHO05D000593 2.9e-13 80.5 391 28.9
SalBow8G0784 Salvia bowleyana HOM05D000336 ORTHO05D000593 2.9e-13 80.5 314 31.5
MBI05_g12582_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D000593 5.0e-13 79.7 353 28.3
Sed0008814 Sechium edule HOM05D000336 ORTHO05D000593 8.5e-13 79.0 341 30.5
Aqoxy4G00167 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 1.1e-12 78.6 349 28.1
Aqoxy7G01125 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 1.1e-12 78.6 279 30.5
SalBow8G5153 Salvia bowleyana HOM05D000336 ORTHO05D000593 1.1e-12 78.6 314 31.2
PGR031G1206 Punica granatum HOM05D000336 ORTHO05D000593 2.5e-12 77.4 310 28.4
Oeu046830.1 Olea europaea HOM05D000336 ORTHO05D000593 4.2e-12 76.6 345 30.7
CSS0024579 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 5.5e-12 76.3 394 27.2
DCAR_007916 Daucus carota HOM05D000336 ORTHO05D000593 7.2e-12 75.9 398 26.4
Cpa.g.sc17.161 Carica papaya HOM05D000336 ORTHO05D000593 1.6e-11 74.7 355 26.5
SGA_v2.0_scaffold1G00121 Striga asiatica HOM05D000336 ORTHO05D000593 2.7e-11 73.9 341 29.3
Aqoxy1G03222 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 3.6e-11 73.6 274 29.6
Rhsim02G0151700 Rhododendron simsii HOM05D000336 ORTHO05D000593 3.6e-11 73.6 390 27.2
Migut.M00969 Erythranthe guttata HOM05D000336 ORTHO05D000593 1.3e-10 71.6 421 27.3
MSTRG.16194 Avicennia marina HOM05D000336 ORTHO05D000593 8.8e-10 68.9 397 27.0
BolC7t43525H Brassica oleracea HOM05D000336 ORTHO05D000593 1.5e-09 68.2 82 53.7
Os07g0507700 Oryza sativa ssp. japonica HOM05D000336 ORTHO05D000593 1.9e-09 67.8 341 28.4
BcaB04g17088 Brassica carinata HOM05D001245 ORTHO05D005230 2.5e-09 67.4 41 85.4
ATR0763G091 Amborella trichopoda HOM05D000336 ORTHO05D000593 3.3e-09 67.0 314 28.0
CAN.G257.98 Capsicum annuum HOM05D000336 ORTHO05D000593 3.3e-09 67.0 390 26.2
Zm00001eb200990 Zea mays HOM05D000336 ORTHO05D000593 9.7e-09 65.5 285 28.8
THA.LOC104808278 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 1.3e-08 65.1 282 32.6
Thecc.09G333400 Theobroma cacao HOM05D000080 ORTHO05D000593 1.7e-08 64.7 211 32.7
Nitab4.5_0003714g0120 Nicotiana tabacum HOM05D000018 ORTHO05D000593 3.7e-08 63.5 385 27.3
Oeu001207.1 Olea europaea HOM05D000336 ORTHO05D000593 3.7e-08 63.5 286 27.3
Zm00001eb091620 Zea mays HOM05D000336 ORTHO05D000593 3.7e-08 63.5 308 26.6
TAR629G3391 Trochodendron aralioides HOM05D000336 ORTHO05D000593 6.3e-08 62.8 382 25.7
Lj1A1180G72 Lonicera japonica HOM05D000336 ORTHO05D000593 8.2e-08 62.4 152 33.6
SGA_v2.0_scaffold37G14615 Striga asiatica HOM05D000336 ORTHO05D002301 8.2e-08 62.4 119 34.5
SEGI_38605 Sequoiadendron giganteum HOM05D000336 ORTHO05D000593 1.4e-07 61.6 63 49.2
TPR.G26156 Trifolium pratense HOM05D000336 ORTHO05D002301 3.1e-07 60.5 63 52.4
Oeu035034.1 Olea europaea HOM05D000336 ORTHO05D000593 4.1e-07 60.1 310 25.2
Sopen02g020540 Solanum pennellii HOM05D000336 ORTHO05D000593 4.1e-07 60.1 384 26.3
Nitab4.5_0004447g0050 Nicotiana tabacum HOM05D000018 ORTHO05D000593 5.3e-07 59.7 386 26.7
HPP92_002699 Vanilla planifolia HOM05D000336 ORTHO05D002301 6.9e-07 59.3 66 48.5
ECA236G4396 Erigeron canadensis HOM05D000336 ORTHO05D000593 9.1e-07 58.9 43 60.5
Oeu001204.1 Olea europaea HOM05D000336 ORTHO05D000593 9.1e-07 58.9 311 27.7
Oeu042392.1 Olea europaea HOM05D000336 ORTHO05D000593 9.1e-07 58.9 44 63.6
HPP92_011728 Vanilla planifolia HOM05D000336 ORTHO05D002301 9.1e-07 58.9 66 48.5
Duzib106G1948 Durio zibethinus HOM05D000336 ORTHO05D000593 1.5e-06 58.2 297 27.9
HanXRQChr09g0248741 Helianthus annuus HOM05D000336 ORTHO05D000593 1.5e-06 58.2 63 47.6
Actinidia25599 Actinidia chinensis HOM05D000336 ORTHO05D002301 2.0e-06 57.8 63 50.8
CARHR018400 Cardamine hirsuta HOM05D000336 ORTHO05D000593 2.0e-06 57.8 69 46.4
Manes.06G116700 Manihot esculenta HOM05D000336 ORTHO05D002301 2.0e-06 57.8 75 40.0
Hund02419 Selenicereus undatus HOM05D000336 ORTHO05D002301 2.6e-06 57.4 67 49.3
Ah.09g233010 Amaranthus hybridus HOM05D000336 ORTHO05D000593 3.4e-06 57.0 43 60.5
Psat5g140200 Pisum sativum HOM05D000336 ORTHO05D002301 3.4e-06 57.0 63 49.2
Rhsim05G0096200 Rhododendron simsii HOM05D000336 ORTHO05D000593 3.4e-06 57.0 43 62.8
SalBow1G2186 Salvia bowleyana HOM05D000336 ORTHO05D002301 3.4e-06 57.0 119 35.3
FvH4_6g52920 Fragaria vesca HOM05D000336 ORTHO05D002301 4.5e-06 56.6 43 65.1
FAN02G4360 Fragaria x ananassa HOM05D000336 ORTHO05D002301 4.5e-06 56.6 43 65.1
FAN05G1981 Fragaria x ananassa HOM05D000336 ORTHO05D002301 4.5e-06 56.6 43 65.1
FAN09G3672 Fragaria x ananassa HOM05D000336 ORTHO05D002301 4.5e-06 56.6 43 65.1
FAN14G5669 Fragaria x ananassa HOM05D000336 ORTHO05D002301 4.5e-06 56.6 43 65.1
Sp2g16390 Schrenkiella parvula HOM05D000336 ORTHO05D002301 4.5e-06 56.6 63 47.6
Solyc02g071510.3 Solanum lycopersicum HOM05D000336 ORTHO05D000593 4.5e-06 56.6 386 27.2
CSS0031806 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 5.9e-06 56.2 63 50.8
Ciclev10028177m.g Citrus clementina HOM05D000336 ORTHO05D000593 5.9e-06 56.2 43 60.5
Duzib114G0007 Durio zibethinus HOM05D000336 ORTHO05D000593 5.9e-06 56.2 177 33.9
Lj1g0024649 Lotus japonicus HOM05D000336 ORTHO05D002301 5.9e-06 56.2 63 49.2
vmacro19596 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 5.9e-06 56.2 144 33.3
Zm00001eb261520 Zea mays HOM05D000336 ORTHO05D002301 5.9e-06 56.2 118 37.3
CSS0041288 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 7.7e-06 55.8 63 49.2
Lsat_1_v5_gn_7_26420 Lactuca sativa HOM05D000336 ORTHO05D000593 7.7e-06 55.8 43 60.5
Peaxi162Scf00420g00340 Petunia axillaris HOM05D000336 ORTHO05D002301 7.7e-06 55.8 104 36.5
Sc22g0004180 Simmondsia chinensis HOM05D000336 ORTHO05D002301 7.7e-06 55.8 63 49.2
GSVIVG01038522001 Vitis vinifera HOM05D000336 ORTHO05D000593 7.7e-06 55.8 43 60.5


User provided reference genes

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