Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 4.2e-227 791.2 446 100.0
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 9.1e-190 667.2 455 85.1
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 2.2e-188 662.5 455 84.0
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 2.9e-188 662.1 457 84.7
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 3.7e-167 592.0 454 78.6
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 8.6e-164 580.9 444 73.2
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 5.5e-163 578.2 469 71.6
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 2.8e-162 575.9 447 79.2
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 6.1e-162 574.7 462 71.4
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 1.8e-158 563.1 454 77.3
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.1e-154 549.7 435 78.2
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 8.9e-153 544.3 467 73.4
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 2.6e-152 542.7 467 73.0
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.2e-144 517.3 452 71.2
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 3.2e-134 482.6 285 77.5
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 4.1e-134 482.3 378 70.1
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 7.8e-133 478.0 286 78.3
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.3e-132 477.2 287 77.7
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.7e-132 476.9 288 77.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.3e-132 476.5 284 76.8
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.3e-132 476.5 287 77.4
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 6.6e-132 474.9 286 77.6
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 6.6e-132 474.9 286 77.6
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.1e-131 474.2 284 78.2
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.5e-131 473.8 268 79.5
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.5e-131 473.8 286 76.2
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.5e-131 473.0 284 76.4
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 3.3e-131 472.6 264 82.2
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 3.6e-130 469.2 264 80.3
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 6.2e-130 468.4 265 81.5
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 6.2e-130 468.4 264 81.4
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 6.2e-130 468.4 271 78.6
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.1e-129 467.6 287 77.7
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.1e-129 467.6 280 76.8
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.4e-129 467.2 270 78.9
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 6.8e-129 464.9 252 82.9
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 8.9e-129 464.5 264 78.8
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.5e-128 463.8 264 79.5
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.0e-128 463.4 287 75.6
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.4e-128 462.6 286 75.2
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 4.4e-128 462.2 285 75.8
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 5.8e-128 461.8 264 79.2
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 9.9e-128 461.1 279 76.0
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.3e-127 460.7 287 76.3
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 2.2e-127 459.9 288 77.4
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 2.9e-127 459.5 260 81.2
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.9e-127 459.5 287 75.6
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 3.8e-127 459.1 260 81.2
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 4.9e-127 458.8 288 77.1
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 6.4e-127 458.4 283 77.4
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.1e-126 457.6 277 78.0
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.4e-126 457.2 259 79.5
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.4e-126 457.2 288 74.7
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.4e-126 457.2 292 71.9
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.9e-126 456.8 260 80.4
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 3.2e-126 456.1 261 78.2
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 3.2e-126 456.1 261 78.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 4.2e-126 455.7 268 77.6
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 4.2e-126 455.7 286 74.8
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 7.1e-126 454.9 270 78.1
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.2e-125 454.1 256 80.5
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.2e-125 454.1 286 74.8
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.6e-125 453.8 310 70.0
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 6.0e-125 451.8 279 78.5
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 6.0e-125 451.8 260 78.8
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.7e-124 450.3 287 72.1
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 2.3e-124 449.9 291 74.2
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.0e-124 449.5 280 73.2
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 6.6e-124 448.4 260 79.6
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.9e-123 446.8 261 78.5
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 4.3e-123 445.7 415 62.7
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.6e-123 445.3 284 72.5
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.3e-122 444.1 252 78.2
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 3.6e-122 442.6 282 72.3
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 4.8e-122 442.2 260 78.5
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 4.8e-122 442.2 437 52.9
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 6.2e-122 441.8 260 76.9
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 8.1e-122 441.4 288 71.5
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-121 440.7 280 73.6
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 3.1e-121 439.5 288 72.2
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 6.9e-121 438.3 260 77.7
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.2e-120 437.6 286 70.6
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-120 437.6 285 71.6
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.5e-120 437.2 251 76.1
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.5e-120 437.2 257 79.0
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.0e-120 436.8 441 52.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 5.8e-120 435.3 260 77.7
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 9.9e-120 434.5 278 69.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 1.3e-119 434.1 259 77.2
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.2e-119 433.3 293 72.7
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 4.9e-119 432.2 293 69.3
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 8.4e-119 431.4 257 77.0
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 9.3e-118 427.9 261 73.6
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.0e-116 424.5 279 70.6
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.0e-116 424.5 251 74.9
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.7e-116 423.7 277 71.8
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 8.7e-116 421.4 236 80.5
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.5e-115 419.9 285 68.4
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.5e-115 419.9 267 73.8
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.3e-114 417.5 289 68.5
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.3e-114 417.5 345 60.0
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.4e-113 414.1 274 69.3
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 7.6e-112 408.3 236 77.1
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 6.4e-111 405.2 264 72.7
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.1e-109 400.2 260 72.7
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.5e-109 399.4 284 67.3
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 3.3e-107 392.9 239 75.7
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 3.7e-106 389.4 310 60.3
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.1e-105 387.9 284 68.7
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 2.4e-105 386.7 286 65.4
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.2e-104 384.4 239 74.1
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.4e-104 382.9 268 67.5
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 2.1e-101 373.6 275 64.0
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.3e-100 370.9 201 79.6
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.1e-97 361.3 206 75.2
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.8e-96 355.5 256 67.2
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 6.5e-95 352.1 267 62.2
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.2e-93 347.8 267 61.8
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 3.7e-90 336.3 262 58.8
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.4e-89 334.3 183 82.0
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.7e-82 310.8 198 73.7
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.8e-82 310.1 249 61.4
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 2.8e-82 310.1 245 60.4
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.1e-81 308.1 173 83.2
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.1e-81 308.1 173 83.2
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.9e-81 305.4 278 56.8
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 2.6e-80 303.5 190 74.7
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 5.9e-80 302.4 177 79.1
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.8e-79 299.7 182 77.5
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 5.0e-79 299.3 173 79.8
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.2e-78 296.2 204 69.6
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 9.4e-78 295.0 270 55.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 3.8e-71 273.1 270 57.0
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 3.0e-68 263.5 203 61.6
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 5.7e-67 259.2 258 50.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.4e-65 253.8 199 60.8
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 2.5e-62 243.8 242 49.2
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.3e-60 237.3 191 58.1
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 9.8e-59 231.9 278 46.4
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.1e-54 218.4 184 56.0
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.4e-51 206.8 205 55.1
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.1e-49 200.3 153 66.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 9.1e-49 198.7 230 46.1
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.5e-48 196.4 142 66.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 7.7e-48 195.7 138 68.1
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.3e-47 194.9 228 47.4
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.8e-45 187.2 174 52.3
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 3.2e-41 173.7 254 41.3
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 5.4e-41 172.9 128 63.3
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 9.2e-41 172.2 124 62.9
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 8.3e-34 149.1 85 72.9
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.5e-30 137.5 79 74.7
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 4.0e-12 77.0 53 60.4
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 6.8e-12 76.3 49 63.3
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 6.8e-12 76.3 49 63.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.7e-07 61.6 162 28.4
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 3.9e-07 60.5 143 29.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 4.3e-06 57.0 223 26.0
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 9.6e-06 55.8 83 33.7


User provided reference genes

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