Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-47 191.8 109 100.0
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 6.5e-41 170.6 103 95.1
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 6.5e-41 170.6 103 95.1
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 6.5e-41 170.6 103 95.1
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-40 169.5 103 94.2
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 2.1e-39 165.6 104 93.3
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-33 146.7 106 83.0
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 6.8e-30 134.0 106 79.2
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.4e-29 131.7 109 66.1
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-28 129.4 106 68.9
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-28 129.4 106 68.9
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 1.7e-28 129.4 106 68.9
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 8.3e-28 127.1 109 75.2
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 2.4e-27 125.6 106 67.9
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-26 122.5 106 73.6
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 2.0e-26 122.5 106 73.6
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 3.5e-26 121.7 106 64.2
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 3.5e-26 121.7 106 64.2
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 3.5e-26 121.7 106 75.5
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 2.3e-25 119.0 106 71.7
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 2.3e-22 109.0 106 64.2
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.5e-21 106.3 105 69.5
BraA08t32331Z Brassica rapa HOM05D003595 ORTHO05D004132 4.9e-20 101.3 103 57.3
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.6e-18 96.3 55 76.4
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 3.5e-18 95.1 52 84.6
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 4.5e-18 94.7 53 79.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 3.8e-17 91.7 53 77.4
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-16 89.4 53 75.5
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-16 89.4 53 75.5
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.9e-16 89.4 53 75.5
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.9e-16 89.4 53 75.5
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-16 89.0 53 75.5
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.5e-16 89.0 53 73.6
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 3.3e-16 88.6 53 73.6
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-15 86.7 52 75.0
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-15 86.7 53 71.7
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 2.8e-15 85.5 53 69.8
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 3.6e-15 85.1 53 69.8
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 3.6e-15 85.1 53 69.8
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.1e-15 84.3 50 76.0
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 6.1e-15 84.3 51 72.5
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 8.0e-15 84.0 52 69.2
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.0e-14 83.6 53 71.7
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 1.8e-14 82.8 50 74.0
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-14 82.0 53 69.8
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 5.2e-14 81.3 115 43.5
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 8.9e-14 80.5 82 48.8
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 8.9e-14 80.5 53 67.9
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 8.9e-14 80.5 53 67.9
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 7.5e-13 77.4 88 43.2
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.3e-12 76.6 112 40.2
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 1.7e-12 76.3 81 48.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 2.2e-12 75.9 51 64.7
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.7e-12 75.1 51 66.7
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.7e-12 75.1 51 64.7
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.9e-12 74.7 52 63.5
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.4e-12 74.3 52 61.5
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 8.3e-12 73.9 52 65.4
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 8.3e-12 73.9 93 46.2
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 8.3e-12 73.9 55 56.4
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.1e-11 73.6 51 64.7
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.1e-11 73.6 51 64.7
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.9e-11 72.8 50 62.0
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.4e-11 72.4 51 58.8
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.4e-11 72.4 51 60.8
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 3.2e-11 72.0 52 63.5
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 3.2e-11 72.0 52 63.5
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 3.2e-11 72.0 56 58.9
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 4.1e-11 71.6 102 40.2
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 4.1e-11 71.6 51 62.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 5.4e-11 71.2 54 57.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 7.0e-11 70.9 52 63.5
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 9.2e-11 70.5 52 59.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 9.2e-11 70.5 89 39.3
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 9.2e-11 70.5 51 60.8
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 9.2e-11 70.5 54 61.1
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 9.2e-11 70.5 118 37.3
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.2e-10 70.1 51 62.7
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.2e-10 70.1 52 59.6
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.6e-10 69.7 89 46.1
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.6e-10 69.7 93 40.9
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 2.0e-10 69.3 53 60.4
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.0e-10 69.3 52 57.7
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 2.0e-10 69.3 101 35.6
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 2.0e-10 69.3 79 45.6
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 2.0e-10 69.3 53 56.6
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 2.7e-10 68.9 86 48.8
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.7e-10 68.9 51 58.8
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.7e-10 68.9 51 58.8
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.7e-10 68.9 51 58.8
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 2.7e-10 68.9 50 60.0
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 2.7e-10 68.9 54 57.4
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 3.5e-10 68.6 40 75.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 3.5e-10 68.6 89 40.4
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 3.5e-10 68.6 51 62.7
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.6e-10 68.2 51 58.8
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 6.0e-10 67.8 50 58.0
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 6.0e-10 67.8 81 48.1
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 6.0e-10 67.8 81 48.1
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 7.8e-10 67.4 51 56.9
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 7.8e-10 67.4 55 60.0
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 7.8e-10 67.4 104 37.5
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.0e-09 67.0 52 55.8
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.0e-09 67.0 56 55.4
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.0e-09 67.0 51 56.9
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.0e-09 67.0 53 54.7
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.0e-09 67.0 56 55.4
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-09 66.6 82 48.8
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.3e-09 66.6 57 56.1
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.3e-09 66.6 80 42.5
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-09 66.6 54 53.7
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-09 66.6 54 53.7
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.7e-09 66.2 52 57.7
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.7e-09 66.2 51 60.8
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.3e-09 65.9 52 59.6
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 2.3e-09 65.9 51 54.9
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.3e-09 65.9 52 59.6
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 2.3e-09 65.9 84 40.5
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 3.0e-09 65.5 51 54.9
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.0e-09 65.5 51 54.9
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.0e-09 65.5 51 54.9
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.0e-09 65.5 51 54.9
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 3.0e-09 65.5 51 56.9
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.9e-09 65.1 51 56.9
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.9e-09 65.1 49 55.1
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 3.9e-09 65.1 51 52.9
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 5.0e-09 64.7 50 64.0
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 6.6e-09 64.3 48 66.7
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 6.6e-09 64.3 50 62.0
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 8.6e-09 63.9 91 41.8
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.1e-08 63.5 54 53.7
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.1e-08 63.5 51 52.9
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.1e-08 63.5 88 42.0
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.5e-08 63.2 51 52.9
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.9e-08 62.8 52 53.8
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 1.9e-08 62.8 49 57.1
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 2.5e-08 62.4 51 54.9
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.3e-08 62.0 54 53.7
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 3.3e-08 62.0 53 54.7
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 3.3e-08 62.0 52 55.8
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 4.3e-08 61.6 56 53.6
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 5.6e-08 61.2 55 52.7
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 7.3e-08 60.8 52 50.0
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 9.5e-08 60.5 49 51.0
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.2e-07 60.1 50 50.0
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.2e-07 60.1 90 35.6
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.2e-07 60.1 50 50.0
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.6e-07 59.7 57 47.4
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.6e-07 59.7 51 49.0
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 2.1e-07 59.3 55 47.3
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.1e-07 59.3 89 39.3
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.8e-07 58.9 53 50.9
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.8e-07 58.9 53 50.9
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 3.6e-07 58.5 50 50.0
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.6e-07 58.5 48 58.3
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 3.6e-07 58.5 53 52.8
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 4.7e-07 58.2 54 55.6
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 6.2e-07 57.8 60 50.0
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.2e-07 57.8 52 53.8
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 1.1e-06 57.0 52 50.0
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.1e-06 57.0 48 56.2
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.4e-06 56.6 52 48.1
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-06 56.6 53 56.6
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-06 56.6 53 56.6
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.4e-06 56.6 53 56.6
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 1.8e-06 56.2 54 50.0
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.1e-06 55.5 53 49.1
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 4.0e-06 55.1 54 50.0
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.2e-06 54.7 48 56.2
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 5.2e-06 54.7 96 35.4
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 8.9e-06 53.9 50 48.0


User provided reference genes

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