Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 0.0e+00 1238.8 664 100.0
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 0.0e+00 1190.6 648 96.0
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 0.0e+00 1181.8 648 95.4
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 0.0e+00 1181.8 648 95.4
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 0.0e+00 1160.6 636 95.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 0.0e+00 1153.3 649 92.9
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 0.0e+00 1152.9 636 94.7
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 0.0e+00 1128.2 665 90.4
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 0.0e+00 1127.9 649 91.2
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 0.0e+00 1117.8 647 90.0
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 0.0e+00 1097.4 649 88.6
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 0.0e+00 1087.4 647 87.6
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.6e-307 1057.7 669 83.9
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 4.0e-258 894.8 655 72.5
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.9e-229 798.5 661 63.7
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.9e-228 796.2 650 64.6
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 7.3e-228 794.3 647 64.0
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 6.9e-226 787.7 657 62.9
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.6e-225 785.8 655 63.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.4e-225 785.0 655 63.2
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 9.9e-225 783.9 652 63.7
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 9.9e-225 783.9 652 61.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 4.9e-224 781.6 660 61.1
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.2e-223 778.9 659 63.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 3.2e-223 778.9 661 62.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 6.0e-222 774.6 644 63.5
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.6e-221 771.2 649 62.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 9.6e-220 767.3 642 62.5
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.1e-219 766.1 689 60.1
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.8e-219 765.0 633 63.5
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 4.8e-219 765.0 641 62.2
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.4e-218 762.7 644 60.7
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.3e-216 756.9 644 60.1
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.3e-216 756.9 654 61.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.7e-216 756.5 640 61.2
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.2e-216 756.1 655 61.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.9e-216 755.7 642 61.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.4e-216 754.2 655 59.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.1e-215 753.8 644 60.2
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.1e-215 753.8 689 59.1
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.4e-215 752.7 642 60.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.3e-213 746.1 656 61.3
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 3.9e-213 745.3 640 60.0
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-212 743.8 642 58.9
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-212 743.4 642 59.0
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 5.6e-212 741.5 644 58.9
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.3e-211 740.3 667 58.6
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 3.7e-211 738.8 671 61.0
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 4.8e-211 738.4 642 59.0
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-210 737.3 647 60.6
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 4.0e-210 735.3 647 60.1
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.2e-209 733.8 651 58.4
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.5e-209 733.4 642 58.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.6e-209 732.6 642 58.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.5e-209 731.9 647 60.3
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.6e-209 731.1 622 60.0
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-208 730.3 642 58.9
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-208 729.9 642 58.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.7e-208 729.9 644 59.0
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.8e-208 728.8 648 59.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.9e-208 728.4 649 59.9
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 6.5e-208 728.0 644 58.4
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.5e-207 724.9 634 60.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.0e-205 720.7 673 58.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 5.1e-205 718.4 652 57.7
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 6.7e-205 718.0 642 57.9
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.7e-204 714.9 644 56.8
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-201 706.1 634 59.9
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.9e-200 702.6 652 57.2
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.8e-200 702.2 646 57.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 6.5e-200 701.4 642 57.2
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 8.4e-200 701.0 674 54.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.0e-197 694.1 656 56.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.3e-197 693.7 639 56.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.4e-194 682.9 659 55.7
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.1e-194 682.6 659 55.7
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 5.3e-194 681.8 608 59.4
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 6.9e-194 681.4 639 56.0
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 4.5e-193 678.7 633 55.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 7.7e-193 677.9 647 56.6
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.9e-191 673.3 639 56.2
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 3.2e-191 672.5 642 53.6
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.2e-191 672.5 647 53.9
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.2e-191 672.5 664 55.4
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 4.2e-191 672.2 554 64.1
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-190 670.6 652 53.2
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.6e-190 670.2 642 56.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 4.6e-190 668.7 635 54.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 5.1e-189 665.2 640 55.8
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.4e-188 661.4 647 57.2
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.8e-186 656.8 642 52.5
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.2e-183 646.0 701 51.9
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 3.6e-182 642.5 654 53.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.4e-181 640.6 538 60.4
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 7.4e-180 634.8 549 59.0
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.4e-178 629.8 643 54.1
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 7.7e-177 624.8 647 51.3
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 3.2e-175 619.4 621 56.4
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 6.1e-174 615.1 647 51.3
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 3.8e-168 595.9 648 51.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.7e-163 579.3 532 55.6
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 8.5e-160 568.2 636 50.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.5e-159 567.4 577 53.9
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.5e-156 557.4 643 47.0
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 9.8e-156 554.7 647 47.1
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.7e-155 553.9 660 47.3
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.9e-155 552.4 551 54.4
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.6e-153 547.4 538 52.2
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.4e-148 529.6 513 54.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 7.8e-145 518.5 644 44.9
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.9e-144 516.2 608 53.5
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.3e-133 480.3 641 43.1
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 2.9e-131 473.4 665 42.0
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.7e-129 466.8 639 42.4
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.0e-128 464.9 434 57.1
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.1e-128 462.6 638 41.8
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 8.4e-123 445.3 642 39.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 7.1e-122 442.2 638 42.3
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.2e-122 441.8 400 56.5
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 5.1e-120 436.0 397 59.7
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-114 417.2 383 64.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.3e-110 404.8 390 53.8
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.2e-108 398.3 607 46.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 4.2e-90 336.7 293 66.9
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.9e-87 327.8 306 63.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.3e-72 277.7 434 40.6
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.7e-72 276.2 245 56.7
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.1e-69 267.3 251 55.0
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 3.2e-66 257.3 258 59.7
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.6e-65 255.0 201 66.2
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 3.0e-64 250.8 431 37.8
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.1e-61 242.3 189 69.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.8e-56 224.9 234 51.3
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.0e-44 184.9 201 50.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.7e-41 173.7 253 41.9
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 4.1e-37 160.6 168 48.8
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.7e-33 147.1 181 47.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 6.8e-32 143.3 604 25.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.9e-32 142.9 237 41.4
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-31 141.4 133 54.1
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.6e-28 130.6 108 60.2
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.4e-24 119.0 98 59.2
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 3.1e-24 117.9 74 79.7
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.8e-23 113.6 110 58.2
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-20 105.5 71 77.5
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.0e-20 105.1 96 56.2
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 8.6e-19 99.8 75 68.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-17 95.1 132 42.4
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-17 95.1 140 42.1
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-17 94.7 132 43.2
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 3.1e-16 91.3 88 54.5
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 3.1e-16 91.3 80 56.2
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 5.2e-16 90.5 88 50.0
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.8e-15 87.0 68 61.8
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 6.4e-14 83.6 68 67.6
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 6.4e-14 83.6 65 70.8
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 6.4e-14 83.6 65 70.8
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-13 81.6 66 59.1
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 4.1e-13 80.9 52 78.8
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 8.6e-11 73.2 63 57.1
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 8.6e-11 73.2 92 48.9
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 4.3e-10 70.9 51 72.5
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-08 66.2 70 44.3
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-08 65.9 64 54.7
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 8.9e-08 63.2 41 73.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 2.6e-07 61.6 65 44.6
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.6e-07 61.6 55 47.3


User provided reference genes

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