Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33581 Brassica carinata HOM05D040043 ORTHO05D094116 9.3e-54 213.4 115 100.0
BcaB06g27803 Brassica carinata HOM05D040043 ORTHO05D091536 7.3e-43 177.2 121 83.5
BcaB08g35057 Brassica carinata HOM05D040043 ORTHO05D095809 5.1e-36 154.5 85 96.5
AL7G38680 Arabidopsis lyrata HOM05D001202 ORTHO05D001728 4.1e-09 65.1 100 44.0
Carub.0007s2517 Capsella rubella HOM05D001202 ORTHO05D001728 4.1e-09 65.1 100 44.0
CARHR222730 Cardamine hirsuta HOM05D001202 ORTHO05D001728 4.1e-09 65.1 100 44.0
Thhalv10025902m.g Eutrema salsugineum HOM05D001202 ORTHO05D001728 4.1e-09 65.1 100 44.0
Sp7g14880 Schrenkiella parvula HOM05D001202 ORTHO05D001728 4.1e-09 65.1 100 44.0
BcaB04g18378 Brassica carinata HOM05D001202 ORTHO05D001728 6.9e-09 64.3 100 44.0
BcaC07g37978 Brassica carinata HOM05D001202 ORTHO05D001728 6.9e-09 64.3 100 44.0
BcaNung06745 Brassica carinata HOM05D001202 ORTHO05D001728 6.9e-09 64.3 100 44.0
A08p12270 Brassica napus HOM05D001202 ORTHO05D001728 6.9e-09 64.3 100 44.0
BolC8t48360H Brassica oleracea HOM05D001202 ORTHO05D001728 6.9e-09 64.3 100 44.0
BraA08t33231Z Brassica rapa HOM05D001202 ORTHO05D001728 6.9e-09 64.3 100 44.0
BcaC06g33476 Brassica carinata HOM05D001202 ORTHO05D001728 1.2e-08 63.5 100 43.0
A03p49760 Brassica napus HOM05D001202 ORTHO05D001728 1.2e-08 63.5 100 43.0
C07p47820 Brassica napus HOM05D001202 ORTHO05D001728 1.2e-08 63.5 100 43.0
BolC7t45304H Brassica oleracea HOM05D001202 ORTHO05D001728 1.2e-08 63.5 100 43.0
BraA03t14072Z Brassica rapa HOM05D001202 ORTHO05D001728 1.2e-08 63.5 100 43.0
Aa31LG2G12420 Aethionema arabicum HOM05D001202 ORTHO05D001728 2.0e-08 62.8 100 43.0
TAR626G1827 Trochodendron aralioides HOM05D001202 ORTHO05D001728 3.4e-08 62.0 98 40.8
Nn1g03192 Nelumbo nucifera HOM05D001202 ORTHO05D001728 5.9e-08 61.2 98 40.8
Nitab4.5_0001904g0060 Nicotiana tabacum HOM05D001202 ORTHO05D001728 7.7e-08 60.8 98 39.8
Nitab4.5_0002478g0060 Nicotiana tabacum HOM05D001202 ORTHO05D001728 7.7e-08 60.8 98 39.8
Solyc11g012710.2 Solanum lycopersicum HOM05D001202 ORTHO05D001728 1.0e-07 60.5 98 41.8
TAR624G1362 Trochodendron aralioides HOM05D001202 ORTHO05D001728 1.0e-07 60.5 98 39.8
Nitab4.5_0001296g0070 Nicotiana tabacum HOM05D001202 ORTHO05D001728 1.3e-07 60.1 101 39.6
CAN.G1156.15 Capsicum annuum HOM05D001202 ORTHO05D001728 1.7e-07 59.7 98 40.8
CAN.G449.31 Capsicum annuum HOM05D001202 ORTHO05D001728 2.9e-07 58.9 98 37.8
PGSC0003DMG400013299 Solanum tuberosum HOM05D001202 ORTHO05D001728 2.9e-07 58.9 98 40.8
Lj6g0018645 Lotus japonicus HOM05D001202 ORTHO05D001728 3.8e-07 58.5 98 38.8
Sopen11g007450 Solanum pennellii HOM05D001202 ORTHO05D001728 3.8e-07 58.5 98 40.8
DCAR_025227 Daucus carota HOM05D001202 ORTHO05D001728 5.0e-07 58.2 98 38.8
Gohir.A06G204200 Gossypium hirsutum HOM05D001202 ORTHO05D001728 5.0e-07 58.2 98 40.8
Gorai.010G248900 Gossypium raimondii HOM05D001202 ORTHO05D001728 5.0e-07 58.2 98 40.8
Dinv04398 Davidia involucrata HOM05D001202 ORTHO05D001728 6.5e-07 57.8 98 38.8
Eucgr.L00156 Eucalyptus grandis HOM05D001202 ORTHO05D001728 6.5e-07 57.8 98 37.8
PGR004G2341 Punica granatum HOM05D001202 ORTHO05D001728 6.5e-07 57.8 98 37.8
TAR629G3175 Trochodendron aralioides HOM05D001202 ORTHO05D001728 6.5e-07 57.8 98 37.8
Atru.chr1.2277 Acer truncatum HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 37.8
arahy.Tifrunner.gnm1.ann1.HB8LVY Arachis hypogaea HOM05D001202 ORTHO05D001728 8.5e-07 57.4 105 36.2
Haze_07012 Corylus avellana HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 38.8
FvH4_3g00390 Fragaria vesca HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 37.8
FAN21G3748 Fragaria x ananassa HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 37.8
FAN25G0082 Fragaria x ananassa HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 37.8
MD10G1338400 Malus domestica HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 38.8
Peaxi162Scf00576g00121 Petunia axillaris HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 37.8
Prupe.4G004500 Prunus persica HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 38.8
RcHm_v2.0_Chr5g0000591 Rosa chinensis HOM05D001202 ORTHO05D001728 8.5e-07 57.4 98 37.8
COL.COLO4_31934 Corchorus olitorius HOM05D001202 ORTHO05D001728 1.1e-06 57.0 98 38.8
Gohir.D06G217300 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.1e-06 57.0 98 39.8
Oeu025399.1 Olea europaea HOM05D001202 ORTHO05D001728 1.1e-06 57.0 98 37.8
Potri.006G005800 Populus trichocarpa HOM05D001202 ORTHO05D001728 1.1e-06 57.0 98 36.7
THA.LOC104814479 Tarenaya hassleriana HOM05D001202 ORTHO05D001728 1.1e-06 57.0 98 38.8
MBI16_g22135_MAGBIO Magnolia biondii HOM05D001202 ORTHO05D001728 1.4e-06 56.6 98 36.7
Peaxi162Scf00442g00711 Petunia axillaris HOM05D001202 ORTHO05D001728 1.4e-06 56.6 98 37.8
Medtr2g026695 Medicago truncatula HOM05D001202 ORTHO05D001728 1.9e-06 56.2 97 38.1
TPR.G10576 Trifolium pratense HOM05D001202 ORTHO05D001728 1.9e-06 56.2 98 36.7
Cpa.g.sc27.236 Carica papaya HOM05D001202 ORTHO05D001728 2.5e-06 55.8 98 38.8
Sopen05g032710 Solanum pennellii HOM05D001202 ORTHO05D001728 2.5e-06 55.8 98 36.7
Actinidia02286 Actinidia chinensis HOM05D001202 ORTHO05D001728 3.2e-06 55.5 97 38.1
Solyc05g054220.3 Solanum lycopersicum HOM05D001202 ORTHO05D001728 3.2e-06 55.5 98 36.7
PGSC0003DMG400008440 Solanum tuberosum HOM05D001202 ORTHO05D001728 3.2e-06 55.5 98 36.7
Thecc.06G240100 Theobroma cacao HOM05D001202 ORTHO05D001728 3.2e-06 55.5 98 37.8
HanXRQChr17g0558141 Helianthus annuus HOM05D001202 ORTHO05D001728 4.2e-06 55.1 108 34.3
MD05G1360800 Malus domestica HOM05D001202 ORTHO05D001728 4.2e-06 55.1 98 37.8
Psat1g172880 Pisum sativum HOM05D001202 ORTHO05D001728 4.2e-06 55.1 98 35.7
QL05p067849 Quercus lobata HOM05D001202 ORTHO05D001728 4.2e-06 55.1 98 37.8
GSVIVG01005136001 Vitis vinifera HOM05D001202 ORTHO05D001728 4.2e-06 55.1 98 36.7
CANSAT56G3013 Cannabis sativa HOM05D001202 ORTHO05D001728 5.5e-06 54.7 98 36.7
Ciclev10016199m.g Citrus clementina HOM05D001202 ORTHO05D001728 5.5e-06 54.7 98 36.7
Cc09_g00390 Coffea canephora HOM05D001202 ORTHO05D001728 5.5e-06 54.7 98 37.8
Hma1.2p1_1175F.1_g263960 Hydrangea macrophylla HOM05D001202 ORTHO05D001728 5.5e-06 54.7 115 33.9
vmacro03614 Vaccinium macrocarpon HOM05D001202 ORTHO05D001728 5.5e-06 54.7 98 36.7
arahy.Tifrunner.gnm1.ann1.6I306W Arachis hypogaea HOM05D001202 ORTHO05D001728 7.2e-06 54.3 98 36.7
HanXRQChr16g0515791 Helianthus annuus HOM05D001202 ORTHO05D001728 7.2e-06 54.3 98 35.7
THA.LOC104812784 Tarenaya hassleriana HOM05D001202 ORTHO05D001728 7.2e-06 54.3 99 39.4
CSS0035423 Camellia sinensis var. sinensis HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 36.7
CSS0036190 Camellia sinensis var. sinensis HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 36.7
CiPaw.10G081400 Carya illinoinensis HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 35.7
Duzib235G0098 Durio zibethinus HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 36.7
Glyma.09G013900 Glycine max HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 36.7
Glyma.15G118600 Glycine max HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 36.7
Lalb_Chr15g0088191 Lupinus albus HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 36.7
Sed0009781 Sechium edule HOM05D001202 ORTHO05D001728 9.4e-06 53.9 97 37.1
TWI63G0547 Tripterygium wilfordii HOM05D001202 ORTHO05D001728 9.4e-06 53.9 97 36.1
VMungo0540G1650 Vigna mungo HOM05D001202 ORTHO05D001728 9.4e-06 53.9 98 36.7


User provided reference genes

Program Settings