Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 9.1e-159 563.5 287 100.0
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 1.5e-129 466.5 287 85.4
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 2.1e-123 446.0 288 82.6
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 6.4e-120 434.5 288 81.9
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 6.4e-120 434.5 288 81.9
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 6.4e-120 434.5 288 81.9
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 2.1e-110 402.9 297 74.4
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 5.6e-108 394.8 302 72.2
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.1e-98 364.0 300 68.7
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 2.6e-97 359.4 297 68.7
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 5.1e-93 345.1 297 68.0
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 9.6e-84 314.3 297 61.6
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.3e-80 303.9 287 61.0
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 1.9e-63 246.9 265 54.3
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 1.5e-57 227.3 262 52.7
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 2.0e-57 226.9 259 51.7
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 7.7e-57 224.9 271 50.6
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.7e-56 223.8 272 51.5
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.2e-56 223.4 268 52.6
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 5.5e-55 218.8 228 56.6
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 6.1e-54 215.3 277 48.7
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 6.1e-54 215.3 253 48.6
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 7.9e-54 214.9 236 52.5
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 1.8e-53 213.8 254 51.6
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 1.8e-53 213.8 233 51.5
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 3.9e-53 212.6 238 51.7
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 2.6e-52 209.9 243 51.9
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 3.3e-52 209.5 275 47.6
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 4.4e-52 209.1 286 44.8
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 2.2e-51 206.8 276 46.7
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 3.1e-50 203.0 247 47.8
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 4.1e-50 202.6 265 44.9
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 5.3e-50 202.2 211 56.4
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 5.3e-50 202.2 252 49.2
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.5e-49 200.7 249 48.6
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 4.5e-49 199.1 217 53.0
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 2.2e-48 196.8 233 48.1
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 1.4e-47 194.1 225 51.6
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 7.2e-47 191.8 231 47.2
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 2.1e-46 190.3 166 60.2
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 3.6e-46 189.5 253 45.1
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 4.7e-46 189.1 268 42.5
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 8.0e-46 188.3 237 47.3
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 1.4e-45 187.6 180 55.6
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 1.4e-45 187.6 265 44.2
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 1.8e-45 187.2 275 43.3
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 3.9e-45 186.0 276 42.4
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 6.7e-45 185.3 180 54.4
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 6.7e-45 185.3 214 51.9
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 8.8e-45 184.9 189 52.9
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 1.1e-44 184.5 233 47.2
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 3.3e-44 183.0 267 45.7
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 5.7e-44 182.2 180 53.9
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 5.7e-44 182.2 265 44.9
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 5.7e-44 182.2 268 43.3
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.4e-44 181.8 226 48.2
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 9.7e-44 181.4 235 47.2
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.7e-43 180.6 238 47.9
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.2e-43 180.3 125 69.6
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 2.2e-43 180.3 223 52.5
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 3.7e-43 179.5 270 46.7
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 6.3e-43 178.7 238 44.1
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 1.4e-42 177.6 226 45.1
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 1.8e-42 177.2 156 59.6
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 3.1e-42 176.4 210 49.5
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.3e-42 175.6 229 47.6
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 5.9e-41 172.2 134 60.4
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 1.0e-40 171.4 263 40.7
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 1.0e-40 171.4 223 46.2
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 5.0e-40 169.1 256 41.8
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 1.9e-39 167.2 220 45.5
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 5.5e-39 165.6 253 42.7
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 9.4e-39 164.9 124 64.5
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 1.2e-38 164.5 302 37.4
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 2.7e-38 163.3 238 43.7
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 1.8e-37 160.6 213 44.6
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 2.3e-37 160.2 121 62.8
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.0e-37 159.8 162 57.4
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 8.8e-37 158.3 173 49.1
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 2.0e-36 157.1 295 42.0
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 2.8e-35 153.3 202 48.0
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 3.7e-35 152.9 140 55.0
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 5.3e-34 149.1 237 41.8
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 3.8e-32 142.9 224 41.5
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 5.0e-32 142.5 214 42.5
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 1.2e-30 137.9 131 50.4
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.4e-29 134.4 233 40.8
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 2.3e-29 133.7 234 38.0
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 4.1e-26 122.9 117 57.3
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 1.6e-25 120.9 245 35.9
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 2.5e-23 113.6 239 33.9
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 6.1e-22 109.0 241 36.1
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 5.7e-20 102.4 121 47.9
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 2.8e-19 100.1 223 32.7
Aa31sc1417G10 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.5e-15 87.8 92 53.3
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 8.9e-13 78.6 59 66.1
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.5e-12 77.8 46 71.7
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 8.3e-11 72.0 156 35.3
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.1e-10 71.6 148 40.5
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.9e-10 70.9 153 38.6
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 1.6e-06 57.8 44 59.1


User provided reference genes

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