Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.8e-306 1055.0 531 100.0
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 3.5e-273 944.5 539 89.8
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 6.6e-272 940.3 539 89.4
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 2.1e-270 935.3 539 89.1
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 3.6e-270 934.5 539 89.1
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 6.8e-269 930.2 538 87.4
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 7.1e-266 920.2 539 87.0
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.6e-265 919.1 548 87.0
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 6.0e-265 917.1 540 86.9
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.0e-264 916.4 538 87.5
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 6.6e-264 913.7 539 86.5
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 7.3e-263 910.2 583 80.8
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 4.2e-258 894.4 538 85.1
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 7.9e-249 863.6 538 83.1
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 4.3e-247 857.8 537 82.7
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 7.4e-247 857.1 538 82.5
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 1.1e-242 843.2 539 81.1
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 9.6e-239 830.1 563 77.4
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 2.0e-220 769.2 539 74.4
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 4.0e-176 622.1 547 60.5
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.2e-175 620.5 547 60.3
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.2e-175 620.5 544 59.4
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 5.8e-175 618.2 546 61.0
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.2e-173 612.5 547 59.4
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 6.6e-171 604.7 530 59.8
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.5e-170 603.6 554 59.6
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 2.5e-170 602.8 544 60.8
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 4.3e-170 602.1 546 59.0
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 9.5e-170 600.9 546 59.0
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 2.8e-169 599.4 552 59.6
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 6.8e-168 594.7 563 57.2
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.2e-167 594.0 550 59.6
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 3.4e-167 592.4 554 58.7
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 9.8e-167 590.9 553 59.3
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 3.7e-166 589.0 527 58.6
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 9.2e-165 584.3 535 58.5
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 1.7e-163 580.1 539 58.1
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.9e-162 576.6 555 55.5
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 3.3e-162 575.9 544 55.9
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 3.3e-162 575.9 538 58.0
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.6e-162 575.1 531 57.1
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 3.6e-161 572.4 545 57.1
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 4.7e-161 572.0 532 56.8
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 4.7e-161 572.0 536 56.5
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 6.2e-161 571.6 539 56.6
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.1e-161 571.2 532 56.8
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-160 570.9 532 57.0
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 1.1e-160 570.9 522 59.6
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 4.0e-160 568.9 551 56.8
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.0e-160 568.9 532 56.6
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 4.0e-160 568.9 559 55.3
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.2e-159 567.4 536 56.5
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.2e-159 567.4 554 55.8
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.2e-159 567.4 508 58.5
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.5e-159 567.0 532 56.8
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 2.0e-159 566.6 552 56.7
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 2.6e-159 566.2 538 56.5
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 9.9e-159 564.3 540 56.9
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 2.2e-158 563.1 542 55.2
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 3.7e-158 562.4 549 53.9
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 3.2e-157 559.3 555 55.9
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 1.0e-155 554.3 325 88.9
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 3.0e-155 552.7 546 56.4
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 9.6e-154 547.7 550 54.7
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.6e-153 547.0 518 56.2
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 2.1e-153 546.6 557 53.7
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.8e-153 546.2 542 53.5
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 3.6e-153 545.8 522 57.9
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 6.2e-153 545.0 550 54.4
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 8.1e-153 544.7 546 53.8
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 1.4e-152 543.9 538 54.8
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 2.4e-152 543.1 502 58.2
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 1.5e-151 540.4 548 55.3
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 1.5e-151 540.4 550 55.3
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 2.0e-151 540.0 503 56.9
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 2.6e-151 539.7 548 55.3
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.6e-151 539.7 543 53.4
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 7.6e-151 538.1 543 54.0
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.7e-150 537.0 538 52.2
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.9e-150 536.2 543 54.0
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 7.8e-148 528.1 556 52.7
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 1.7e-147 526.9 547 54.5
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 3.0e-147 526.2 496 56.5
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 6.6e-147 525.0 526 54.0
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 3.3e-146 522.7 556 53.6
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 4.3e-146 522.3 689 45.9
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 5.6e-146 521.9 572 50.5
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 1.1e-144 517.7 546 53.7
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 9.0e-144 514.6 535 53.3
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 3.4e-143 512.7 548 53.8
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 7.1e-141 505.0 564 49.8
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 3.0e-139 499.6 541 48.6
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 8.7e-139 498.0 531 50.5
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.5e-138 497.3 536 51.5
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 2.4e-133 479.9 537 51.2
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 1.2e-132 477.6 554 52.2
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 7.9e-132 474.9 470 54.9
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 1.0e-131 474.6 547 51.2
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.9e-128 461.8 417 58.8
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.0e-126 458.0 444 55.6
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.7e-126 457.2 541 47.9
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.2e-125 453.0 511 49.7
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 3.0e-123 446.4 530 49.8
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.7e-121 439.5 555 46.3
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 3.2e-117 426.4 489 49.5
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 9.3e-117 424.9 695 42.0
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 7.9e-108 395.2 366 56.6
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 4.4e-106 389.4 340 64.1
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 3.5e-95 353.2 531 39.2
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 8.0e-92 342.0 324 59.3
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.0e-87 327.4 311 60.1
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 2.0e-87 327.4 338 55.6
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.0e-87 327.4 542 38.6
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.3e-86 324.7 358 53.1
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 1.7e-86 324.3 538 37.0
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.1e-85 321.6 538 38.8
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 4.4e-82 309.7 530 36.6
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 9.8e-82 308.5 396 48.2
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.5e-77 294.7 335 51.0
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 4.7e-76 289.7 359 49.0
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 7.8e-71 272.3 145 91.7
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.0e-67 261.9 379 42.7
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 3.7e-65 253.4 165 78.8
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.5e-61 241.5 340 46.8
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 7.3e-53 212.6 201 49.3
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 1.7e-49 201.4 135 73.3
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 2.2e-49 201.1 133 74.4
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.5e-45 188.3 143 64.3
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 1.6e-44 184.9 151 62.3
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 8.1e-44 182.6 505 29.7
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.1e-43 182.2 179 46.9
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 4.1e-40 170.2 209 43.1
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.7e-38 164.9 105 73.3
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.3e-30 137.9 156 52.6
BcaB07g33467 Brassica carinata HOM05D004567 ORTHO05D005726 1.2e-23 115.5 66 89.4
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.2e-23 115.5 112 57.1
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.1e-22 110.2 99 50.5
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.6e-20 105.1 126 47.6
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 1.8e-19 101.7 138 42.8
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 1.7e-17 95.1 126 42.1
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.4e-16 91.3 53 75.5
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 7.9e-15 86.3 100 44.0
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.2e-12 76.6 84 56.0
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 1.4e-11 75.5 99 42.4
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 4.0e-11 73.9 73 49.3
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.5e-10 70.5 96 37.5
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.8e-09 67.4 89 41.6
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.1e-08 65.9 79 43.0
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 6.0e-07 60.1 146 37.0
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 2.3e-06 58.2 69 39.1
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 2.3e-06 58.2 53 49.1


User provided reference genes

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