Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 5.4e-81 304.3 156 100.0
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 6.5e-42 174.5 141 70.9
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 3.2e-41 172.2 107 86.9
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 2.5e-33 146.0 92 85.9
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 2.5e-33 146.0 92 85.9
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 2.5e-33 146.0 92 85.9
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 3.2e-33 145.6 92 84.8
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 7.2e-33 144.4 92 84.8
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 7.2e-33 144.4 92 83.7
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 7.2e-33 144.4 92 83.7
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 7.2e-33 144.4 92 83.7
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 1.2e-32 143.7 92 84.8
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.1e-32 142.9 92 82.6
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 1.4e-31 140.2 92 81.5
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 1.8e-31 139.8 92 81.5
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 2.5e-30 136.0 92 80.4
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 5.7e-30 134.8 92 77.2
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 5.7e-30 134.8 92 77.2
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 2.2e-29 132.9 92 77.2
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 4.8e-29 131.7 92 75.0
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 4.8e-29 131.7 92 75.0
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 1.8e-28 129.8 94 73.4
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 2.4e-28 129.4 94 74.5
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 3.1e-28 129.0 92 73.9
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 5.3e-28 128.3 92 75.0
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 6.9e-28 127.9 92 73.9
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 2.0e-27 126.3 92 73.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 3.4e-27 125.6 92 73.9
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 4.5e-27 125.2 92 72.8
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 5.9e-27 124.8 92 72.8
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 1.0e-26 124.0 92 71.7
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 1.0e-26 124.0 92 72.8
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.3e-26 123.6 92 72.8
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 1.7e-26 123.2 92 71.7
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 1.7e-26 123.2 92 71.7
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 1.7e-26 123.2 92 71.7
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 1.7e-26 123.2 92 71.7
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 1.7e-26 123.2 92 71.7
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 2.9e-26 122.5 92 70.7
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 2.9e-26 122.5 92 70.7
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 2.9e-26 122.5 92 70.7
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 3.8e-26 122.1 92 70.7
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 5.0e-26 121.7 92 71.7
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 5.0e-26 121.7 92 70.7
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 6.5e-26 121.3 92 69.6
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 6.5e-26 121.3 92 69.6
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 6.5e-26 121.3 92 71.7
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 8.5e-26 120.9 92 70.7
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 8.5e-26 120.9 92 69.6
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 1.1e-25 120.6 92 70.7
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 1.1e-25 120.6 92 70.7
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.1e-25 120.6 92 71.7
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.1e-25 120.6 92 70.7
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 1.4e-25 120.2 92 69.6
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 1.4e-25 120.2 92 71.7
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.5e-25 119.4 92 69.6
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 3.2e-25 119.0 92 69.6
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 3.2e-25 119.0 92 68.5
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 3.2e-25 119.0 92 70.7
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 5.5e-25 118.2 92 70.7
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 5.5e-25 118.2 92 70.7
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 5.5e-25 118.2 92 68.5
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 5.5e-25 118.2 92 70.7
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 7.2e-25 117.9 92 69.6
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 7.2e-25 117.9 92 69.6
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 9.4e-25 117.5 92 70.7
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 9.4e-25 117.5 92 68.5
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 1.2e-24 117.1 94 69.1
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.2e-24 117.1 92 70.7
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 3.6e-24 115.5 92 69.6
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 4.7e-24 115.2 92 68.5
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 6.1e-24 114.8 92 69.6
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 6.1e-24 114.8 92 69.6
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 2.3e-23 112.8 95 66.3
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 3.0e-23 112.5 92 67.4
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.0e-23 112.5 92 66.3
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.9e-23 112.1 92 66.3
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 8.8e-23 110.9 92 66.3
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.1e-22 110.5 92 68.5
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 1.1e-22 110.5 92 66.3
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.1e-22 110.5 127 52.0
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 1.5e-22 110.2 92 64.1
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 1.5e-22 110.2 92 66.3
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 1.5e-22 110.2 92 66.3
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 2.0e-22 109.8 92 66.3
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 2.6e-22 109.4 92 67.4
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 3.3e-22 109.0 79 73.4
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 3.3e-22 109.0 79 73.4
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 3.3e-22 109.0 78 74.4
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 4.4e-22 108.6 92 62.0
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 4.4e-22 108.6 92 65.2
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 5.7e-22 108.2 92 65.2
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 5.7e-22 108.2 92 65.2
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 9.7e-22 107.5 92 65.2
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.2e-21 106.3 92 64.1
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 2.2e-21 106.3 92 66.3
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.2e-21 106.3 92 64.1
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 2.8e-21 105.9 95 63.2
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.8e-21 105.9 79 70.9
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 2.8e-21 105.9 92 63.0
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 3.7e-21 105.5 122 50.8
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 4.8e-21 105.1 92 63.0
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 4.8e-21 105.1 79 70.9
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 6.3e-21 104.8 92 63.0
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 6.3e-21 104.8 78 71.8
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 6.3e-21 104.8 92 62.0
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 1.1e-20 104.0 79 69.6
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 1.1e-20 104.0 77 72.7
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.4e-20 103.6 78 70.5
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.4e-20 103.6 78 70.5
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.4e-20 103.6 78 70.5
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.4e-20 103.6 78 70.5
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 1.4e-20 103.6 78 70.5
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.8e-20 103.2 92 65.2
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 1.8e-20 103.2 77 71.4
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 2.4e-20 102.8 77 70.1
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 2.4e-20 102.8 77 71.4
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 2.4e-20 102.8 77 71.4
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 2.4e-20 102.8 77 71.4
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 3.1e-20 102.4 78 69.2
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 7.0e-20 101.3 77 70.1
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 7.0e-20 101.3 77 70.1
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 7.0e-20 101.3 77 70.1
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 7.0e-20 101.3 77 70.1
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 7.0e-20 101.3 79 68.4
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 7.0e-20 101.3 79 68.4
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 1.2e-19 100.5 77 68.8
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 1.2e-19 100.5 77 68.8
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.2e-19 100.5 78 69.2
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.2e-19 100.5 78 69.2
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 1.2e-19 100.5 77 70.1
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 2.0e-19 99.8 78 69.2
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 2.6e-19 99.4 77 67.5
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 2.6e-19 99.4 92 58.7
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 2.6e-19 99.4 77 68.8
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 2.6e-19 99.4 77 68.8
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.5e-19 99.0 77 67.5
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 3.5e-19 99.0 92 57.6
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 4.5e-19 98.6 92 57.6
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 7.7e-19 97.8 77 67.5
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 1.7e-18 96.7 77 66.2
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.8e-18 95.5 94 57.4
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 3.8e-18 95.5 91 65.9
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 6.5e-18 94.7 77 67.5
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 8.5e-18 94.4 93 60.2
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 7.2e-17 91.3 109 49.5
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 9.4e-17 90.9 61 73.8
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.2e-16 90.5 61 73.8
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 2.1e-16 89.7 86 61.6
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 6.1e-16 88.2 177 36.2
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 8.0e-16 87.8 92 54.3
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 8.0e-16 87.8 92 55.4
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 1.8e-15 86.7 78 61.5
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 8.8e-15 84.3 64 68.8
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 2.0e-14 83.2 92 52.2
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 7.4e-14 81.3 108 45.4
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 6.3e-13 78.2 92 48.9
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 4.1e-12 75.5 92 50.0
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 9.1e-12 74.3 95 44.2
BcaB04g17980 Brassica carinata HOM05D003422 ORTHO05D093628 1.2e-11 73.9 60 70.0
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 1.2e-11 73.9 66 66.7
BolC7t41374H Brassica oleracea HOM05D003422 ORTHO05D004263 1.2e-11 73.9 88 51.1
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 2.0e-11 73.2 92 47.8
BcaB04g17979 Brassica carinata HOM05D003422 ORTHO05D004263 2.0e-11 73.2 80 60.0
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 2.6e-11 72.8 67 65.7
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 3.5e-11 72.4 56 62.5
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.7e-10 70.1 92 46.7
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 3.8e-10 68.9 92 41.3
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 3.8e-10 68.9 92 41.3
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 1.5e-09 67.0 92 46.7
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 5.5e-09 65.1 59 62.7
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 5.5e-09 65.1 92 44.6
BcaB04g17981 Brassica carinata HOM05D003422 ORTHO05D094432 1.2e-08 63.9 53 69.8
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 2.7e-08 62.8 78 44.9
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 2.7e-08 62.8 77 45.5
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 4.0e-07 58.9 88 44.3
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 6.7e-07 58.2 124 36.3
A01p33410 Brassica napus HOM05D003422 ORTHO05D028074 1.2e-06 57.4 57 57.9
A01p33430 Brassica napus HOM05D003422 ORTHO05D015898 1.2e-06 57.4 57 57.9
BraA01t03464Z Brassica rapa HOM05D003422 ORTHO05D028074 1.2e-06 57.4 57 57.9
C01p42710 Brassica napus HOM05D003422 ORTHO05D028074 2.6e-06 56.2 57 56.1
BolC1t04226H Brassica oleracea HOM05D003422 ORTHO05D028074 2.6e-06 56.2 57 56.1
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 4.4e-06 55.5 44 72.7


User provided reference genes

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