Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33337 Brassica carinata HOM05D002624 ORTHO05D002796 7.7e-76 287.0 135 100.0
BcaB01g05622 Brassica carinata HOM05D002624 ORTHO05D002796 6.9e-24 114.4 56 92.9
A03p03680 Brassica napus HOM05D002624 ORTHO05D002796 5.8e-23 111.3 56 91.1
BolC3t12949H Brassica oleracea HOM05D002624 ORTHO05D002796 5.8e-23 111.3 56 91.1
BraA03t09716Z Brassica rapa HOM05D002624 ORTHO05D002796 5.8e-23 111.3 56 91.1
BcaNung05092 Brassica carinata HOM05D002624 ORTHO05D002796 3.8e-22 108.6 56 89.3
BcaNung05093 Brassica carinata HOM05D002624 ORTHO05D002796 3.8e-22 108.6 56 89.3
C03p04170 Brassica napus HOM05D002624 ORTHO05D002796 1.4e-21 106.7 56 87.5
Thhalv10013674m.g Eutrema salsugineum HOM05D002624 ORTHO05D002796 2.1e-20 102.8 55 85.5
BcaB08g37275 Brassica carinata HOM05D002624 ORTHO05D002796 1.3e-19 100.1 55 83.6
C09p68740 Brassica napus HOM05D002624 ORTHO05D002796 1.3e-19 100.1 55 83.6
BolC9t59621H Brassica oleracea HOM05D002624 ORTHO05D002796 1.3e-19 100.1 55 83.6
A10p28470 Brassica napus HOM05D002624 ORTHO05D002796 3.0e-19 99.0 55 81.8
BraA10t44895Z Brassica rapa HOM05D002624 ORTHO05D002796 3.0e-19 99.0 55 81.8
Carub.0006s0710 Capsella rubella HOM05D002624 ORTHO05D002796 6.7e-19 97.8 55 81.8
Sp6g34740 Schrenkiella parvula HOM05D002624 ORTHO05D002796 8.7e-19 97.4 55 81.8
AT5G08200 Arabidopsis thaliana HOM05D002624 ORTHO05D002796 3.3e-18 95.5 55 80.0
AL6G18610 Arabidopsis lyrata HOM05D002624 ORTHO05D002796 9.6e-18 94.0 55 78.2
BcaC03g13211 Brassica carinata HOM05D002624 ORTHO05D002796 1.6e-17 93.2 57 80.7
CARHR204980 Cardamine hirsuta HOM05D002624 ORTHO05D002796 2.8e-17 92.4 55 78.2
Aa31LG3G18340 Aethionema arabicum HOM05D002624 ORTHO05D002796 2.4e-16 89.4 51 80.4
CARHR215540 Cardamine hirsuta HOM05D002624 ORTHO05D002796 3.8e-14 82.0 51 74.5
BolC2t06307H Brassica oleracea HOM05D002624 ORTHO05D002796 2.1e-12 76.3 56 69.6
BraA02t04946Z Brassica rapa HOM05D002624 ORTHO05D002796 6.0e-12 74.7 56 67.9
Carub.0006s2092 Capsella rubella HOM05D002624 ORTHO05D002796 6.7e-11 71.2 57 66.7
BcaC03g13213 Brassica carinata HOM05D002624 ORTHO05D002796 1.1e-10 70.5 56 66.1
C02p03460 Brassica napus HOM05D002624 ORTHO05D002796 1.1e-10 70.5 56 66.1
CARHR190400 Cardamine hirsuta HOM05D002624 ORTHO05D002796 1.5e-10 70.1 58 63.8
AL6G34320 Arabidopsis lyrata HOM05D002624 ORTHO05D002796 3.7e-09 65.5 57 61.4
AT5G23130 Arabidopsis thaliana HOM05D002624 ORTHO05D002796 3.7e-09 65.5 44 70.5
Sp2g23990 Schrenkiella parvula HOM05D002624 ORTHO05D002796 3.7e-09 65.5 56 60.7
BcaC04g23482 Brassica carinata HOM05D002624 ORTHO05D002796 4.8e-09 65.1 45 73.3
C07p44400 Brassica napus HOM05D002624 ORTHO05D002796 1.4e-08 63.5 57 57.9
BolC7t44962H Brassica oleracea HOM05D002624 ORTHO05D002796 1.4e-08 63.5 57 57.9
A03p46380 Brassica napus HOM05D002624 ORTHO05D002796 1.8e-08 63.2 58 58.6
BraA03t13764Z Brassica rapa HOM05D002624 ORTHO05D002796 1.8e-08 63.2 58 58.6
Thhalv10004348m.g Eutrema salsugineum HOM05D002624 ORTHO05D002796 1.8e-08 63.2 57 57.9
Glyma.09G282400 Glycine max HOM05D002624 ORTHO05D002796 1.8e-08 63.2 41 68.3
Ciclev10032391m.g Citrus clementina HOM05D002624 ORTHO05D002796 3.1e-08 62.4 52 59.6
Aa31LG11G2620 Aethionema arabicum HOM05D002624 ORTHO05D002796 5.3e-08 61.6 43 67.4
Glyma.20G003100 Glycine max HOM05D002624 ORTHO05D002796 5.3e-08 61.6 45 60.0
THA.LOC104819378 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 1.5e-07 60.1 58 55.2
Ca_03381_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 2.6e-07 59.3 75 41.3
THA.LOC104818371 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 2.6e-07 59.3 54 61.1
CSS0039901 Camellia sinensis var. sinensis HOM05D002624 ORTHO05D002796 3.4e-07 58.9 53 52.8
Ca_12980_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 3.4e-07 58.9 83 39.8
CiPaw.05G168900 Carya illinoinensis HOM05D002624 ORTHO05D002796 4.5e-07 58.5 51 52.9
Eucgr.J00866 Eucalyptus grandis HOM05D002624 ORTHO05D002796 4.5e-07 58.5 54 48.1
Potri.007G071500 Populus trichocarpa HOM05D002624 ORTHO05D002796 7.6e-07 57.8 49 57.1
CsaV3_3G031410 Cucumis sativus L. HOM05D002624 ORTHO05D002796 1.0e-06 57.4 42 57.1
Sabra05G0076900 Salix brachista HOM05D002624 ORTHO05D002796 1.0e-06 57.4 51 52.9
Potri.005G092800 Populus trichocarpa HOM05D002624 ORTHO05D002796 1.3e-06 57.0 51 52.9
CiPaw.06G060600 Carya illinoinensis HOM05D002624 ORTHO05D002796 1.7e-06 56.6 51 52.9
MELO3C024023.2 Cucumis melo HOM05D002624 ORTHO05D002796 1.7e-06 56.6 49 55.1
Sed0021624 Sechium edule HOM05D002624 ORTHO05D002796 1.7e-06 56.6 49 51.0
Prupe.1G347300 Prunus persica HOM05D002624 ORTHO05D002796 2.2e-06 56.2 43 58.1
Duzib248G0716 Durio zibethinus HOM05D002624 ORTHO05D002796 2.9e-06 55.8 49 55.1
Lalb_Chr10g0094991 Lupinus albus HOM05D002624 ORTHO05D002796 3.8e-06 55.5 38 63.2
PGSC0003DMG400010579 Solanum tuberosum HOM05D002624 ORTHO05D002796 3.8e-06 55.5 53 52.8
CANSAT56G1621 Cannabis sativa HOM05D002624 ORTHO05D002796 6.5e-06 54.7 54 48.1
Solyc02g014090.3 Solanum lycopersicum HOM05D002624 ORTHO05D002796 6.5e-06 54.7 53 52.8
Sopen02g003670 Solanum pennellii HOM05D002624 ORTHO05D002796 6.5e-06 54.7 53 52.8
Thecc.02G160100 Theobroma cacao HOM05D002624 ORTHO05D002796 6.5e-06 54.7 50 50.0
VMungo0251G0947 Vigna mungo HOM05D002624 ORTHO05D002796 6.5e-06 54.7 39 61.5
Lj3C849T16 Lonicera japonica HOM05D002624 ORTHO05D002796 8.4e-06 54.3 54 50.0


User provided reference genes

Program Settings