Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 4.4e-225 784.6 499 100.0
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 8.3e-184 647.5 512 81.1
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.4e-178 630.2 548 75.4
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 1.4e-178 630.2 517 82.4
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 9.2e-175 617.5 513 80.9
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 2.3e-173 612.8 513 80.7
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 7.9e-150 534.6 544 65.4
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.9e-148 530.0 552 68.8
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 4.3e-148 528.9 511 65.6
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 7.4e-148 528.1 538 70.4
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 3.2e-143 512.7 551 60.1
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.7e-142 509.6 542 61.4
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.0e-141 507.7 544 63.2
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 5.0e-112 409.1 552 57.6
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 7.2e-95 352.1 407 59.7
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 2.4e-90 337.0 532 54.3
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 6.8e-77 292.4 521 43.4
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 2.6e-76 290.4 424 46.9
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 3.4e-76 290.0 345 53.9
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.9e-74 284.3 199 66.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.4e-74 283.9 505 42.4
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 4.1e-74 283.1 420 47.9
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 7.0e-74 282.3 512 45.7
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 2.0e-73 280.8 518 44.4
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 2.7e-73 280.4 516 45.3
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.3e-72 278.1 323 57.9
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.9e-72 276.6 518 45.0
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 5.0e-72 276.2 417 51.1
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 5.0e-72 276.2 419 47.5
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.1e-71 275.0 192 67.2
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.1e-71 275.0 191 69.1
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.9e-71 274.2 316 52.5
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 7.3e-71 272.3 413 51.6
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 2.1e-70 270.8 421 51.1
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 2.8e-70 270.4 325 57.5
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.8e-70 270.4 420 45.2
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 3.6e-70 270.0 177 76.3
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 3.6e-70 270.0 177 76.3
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 4.0e-69 266.5 210 60.5
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 8.9e-69 265.4 423 44.2
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 8.9e-69 265.4 317 55.5
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 8.9e-69 265.4 321 54.8
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.2e-68 265.0 201 63.7
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.2e-68 265.0 201 63.7
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.5e-68 264.6 190 64.7
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 4.4e-68 263.1 195 63.6
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.4e-68 263.1 195 63.6
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.4e-68 263.1 201 63.2
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.4e-68 263.1 334 49.4
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 7.5e-68 262.3 338 50.3
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 7.5e-68 262.3 326 53.4
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.3e-67 261.5 314 52.2
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.3e-67 261.5 417 44.1
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.7e-67 261.2 373 45.3
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.2e-67 260.8 425 43.3
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 2.2e-67 260.8 406 42.9
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 3.7e-67 260.0 191 63.9
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 4.9e-67 259.6 202 61.9
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 6.4e-67 259.2 427 42.2
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 6.4e-67 259.2 206 62.1
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 8.3e-67 258.8 355 48.2
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 8.3e-67 258.8 337 50.4
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.1e-66 258.5 413 47.0
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.9e-66 257.7 423 44.7
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.9e-66 257.7 209 59.3
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 7.1e-66 255.8 337 49.9
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.2e-65 255.0 208 62.0
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.2e-65 255.0 343 50.7
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 2.1e-65 254.2 205 61.0
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 2.1e-65 254.2 424 45.3
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.7e-65 253.8 195 62.6
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 2.7e-65 253.8 342 52.6
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 7.8e-65 252.3 192 63.0
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.0e-64 251.9 321 55.5
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.0e-64 251.9 323 54.5
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 1.7e-64 251.1 323 55.1
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 3.0e-64 250.4 140 87.1
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 5.1e-64 249.6 416 45.7
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 8.6e-64 248.8 195 60.0
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.5e-63 248.1 342 52.0
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.6e-62 244.6 323 55.7
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 3.6e-62 243.4 418 46.4
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 1.1e-61 241.9 364 44.0
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 3.1e-61 240.4 319 55.2
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.6e-60 235.7 324 44.4
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 9.9e-60 235.3 356 47.5
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 9.9e-60 235.3 302 46.7
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 1.3e-59 235.0 188 59.0
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.3e-59 235.0 418 41.1
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.2e-59 234.2 363 42.1
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 1.1e-58 231.9 314 47.1
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 4.1e-58 229.9 207 55.1
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.2e-57 228.4 353 45.6
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 1.2e-57 228.4 313 46.0
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.8e-57 225.7 328 44.2
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.0e-56 225.3 314 52.2
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 6.6e-56 222.6 339 44.0
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.5e-55 221.5 171 61.4
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 7.3e-55 219.2 236 60.6
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 9.6e-55 218.8 349 45.3
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.1e-54 217.6 207 53.6
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 6.2e-54 216.1 404 44.1
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 8.1e-54 215.7 447 35.8
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.8e-53 214.5 322 47.5
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 3.1e-53 213.8 383 39.7
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 8.9e-53 212.2 524 35.5
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 4.4e-52 209.9 178 58.4
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.6e-52 209.1 413 39.5
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.3e-48 198.4 401 43.4
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.1e-48 196.4 107 89.7
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 3.9e-32 143.7 331 38.1
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.1e-31 142.1 106 58.5
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 4.8e-30 136.7 228 51.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 2.0e-28 131.3 90 70.0
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 6.5e-27 126.3 123 51.2
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.7e-25 120.9 91 62.6
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 3.9e-24 117.1 132 40.9
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 9.6e-23 112.5 144 36.8
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 4.8e-22 110.2 138 39.9
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.8e-19 100.5 224 34.8
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.9e-17 92.8 64 67.2
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 5.7e-15 86.7 62 69.4
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 2.8e-14 84.3 69 62.3
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 2.8e-14 84.3 82 47.6
BcaC08g44106 Brassica carinata HOM05D002505 ORTHO05D006559 3.7e-14 84.0 121 43.0
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.1e-13 82.4 62 64.5
BcaB05g24931 Brassica carinata HOM05D002505 ORTHO05D006559 4.5e-12 77.0 38 94.7
BcaC08g46840 Brassica carinata HOM05D002505 ORTHO05D006559 4.5e-12 77.0 38 94.7
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.9e-11 74.3 61 60.7
BcaB04g17065 Brassica carinata HOM05D002505 ORTHO05D006559 8.8e-08 62.8 84 48.8
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.5e-07 62.0 288 30.9
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 1.7e-06 58.5 71 35.2
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 8.2e-06 56.2 269 34.6


User provided reference genes

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