Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1476.5 727 100.0
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1432.9 728 97.0
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1428.3 728 96.8
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1427.5 728 97.0
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1427.5 729 96.3
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1426.0 729 96.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1408.3 728 95.9
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1406.3 728 95.2
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1397.9 727 94.5
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1393.3 728 94.4
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1393.3 728 94.1
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1386.7 727 93.9
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1385.2 728 93.4
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1384.8 727 93.5
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1382.1 727 93.4
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1378.2 728 93.0
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1354.0 739 91.3
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1349.7 740 91.1
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1349.0 740 91.1
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1318.9 727 87.8
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1288.9 729 84.6
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 733 84.2
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1283.5 731 84.8
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 732 84.6
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1278.8 731 83.9
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1276.5 731 83.4
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 731 83.7
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 728 84.1
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 731 83.3
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1270.8 732 83.6
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1270.4 728 83.5
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 732 83.7
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1269.6 739 83.5
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 735 83.4
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 733 82.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 733 82.9
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 731 84.1
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 735 83.8
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 734 83.0
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 727 83.8
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 734 82.0
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 82.7
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 731 82.8
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 734 83.2
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 83.2
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 728 83.2
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 729 83.5
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 733 82.1
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 728 83.1
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 729 83.4
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 729 83.4
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 728 83.2
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1260.4 729 83.4
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1260.0 732 82.7
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 727 82.8
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 731 83.2
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1259.2 731 83.3
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1258.8 732 83.1
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1258.4 729 83.5
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1256.5 735 83.1
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1256.1 735 83.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1255.7 732 82.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1255.4 731 83.0
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1255.0 727 82.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1253.4 727 83.4
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1252.7 732 81.6
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1252.3 733 82.4
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1251.9 732 82.8
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1251.9 724 83.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1250.0 732 82.0
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1248.0 733 82.5
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1247.6 773 78.1
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1246.9 735 81.6
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1246.9 700 84.3
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1245.7 732 82.1
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1241.5 749 81.3
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 728 81.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1240.7 733 81.3
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1238.0 730 82.1
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1232.6 732 81.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1230.3 732 80.9
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 732 80.7
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1228.8 733 80.8
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 781 77.5
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1228.0 732 80.5
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 732 80.3
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 732 80.2
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1216.8 774 76.7
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 730 80.4
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1215.3 732 79.6
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1209.5 705 80.4
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 779 75.5
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 779 75.5
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1206.4 731 79.9
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1205.7 725 79.9
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 825 73.2
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1197.6 735 78.1
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1195.3 663 85.5
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1192.2 732 80.2
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1191.8 723 78.3
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1190.6 727 80.5
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1188.3 750 76.4
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1184.9 732 79.5
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1170.2 733 77.2
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1157.1 727 77.3
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1156.4 735 76.3
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1151.3 715 76.1
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1144.8 735 76.5
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 659 83.3
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1134.8 662 83.1
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1124.4 733 73.5
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1120.5 741 73.5
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1106.3 699 75.0
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1105.5 696 75.9
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1097.4 616 85.6
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1089.7 734 72.2
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1087.4 616 84.1
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 1.6e-308 1062.4 733 70.7
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.5e-306 1055.8 585 86.0
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 4.6e-300 1034.2 731 71.3
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 7.9e-300 1033.5 699 72.2
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 4.0e-296 1021.1 752 69.1
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.3e-281 973.0 726 65.3
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.3e-280 967.6 701 68.6
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.5e-277 958.7 732 64.1
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.2e-276 956.4 713 64.4
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.5e-258 896.3 690 62.6
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.2e-253 878.6 653 66.0
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 6.7e-251 870.9 669 64.1
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 6.3e-249 864.4 505 84.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.9e-245 852.8 700 60.0
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 5.5e-245 851.3 567 73.7
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.6e-236 823.2 702 57.3
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 3.3e-229 798.9 783 53.6
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.1e-219 767.3 507 74.2
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.2e-209 733.0 417 83.5
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.2e-202 710.7 700 52.0
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-176 624.4 422 71.6
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 2.0e-157 560.5 377 71.6
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 3.6e-151 539.7 303 86.8
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 7.2e-144 515.4 317 77.9
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.0e-141 507.3 357 70.9
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 4.5e-138 496.1 311 79.1
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 6.1e-135 485.7 349 74.2
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.7e-124 451.1 318 69.5
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-112 411.8 288 69.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 9.5e-104 382.1 312 63.5
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 5.4e-91 339.7 183 82.0
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.9e-89 333.6 209 76.1
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-84 318.5 216 76.9
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 5.1e-81 306.6 446 44.6
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 2.8e-79 300.8 202 78.7
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.6e-71 275.0 353 47.9
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 9.0e-70 269.2 168 72.6
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.2e-67 260.4 208 62.5
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 9.6e-56 222.6 202 63.4
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 5.1e-49 200.3 127 75.6
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 5.7e-48 196.8 219 45.2
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-47 194.9 101 91.1
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 5.7e-40 170.2 208 49.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-39 168.7 135 68.1
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-35 156.0 80 90.0
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.4e-30 139.0 182 46.7
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.8e-30 138.7 182 46.7
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.6e-26 125.6 161 47.8
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.7e-23 115.5 101 61.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 7.0e-22 110.2 63 74.6
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-21 107.1 70 82.9
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 7.7e-21 106.7 69 84.1
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 1.0e-20 106.3 52 92.3
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 6.5e-20 103.6 60 80.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.1e-19 102.8 130 50.8
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.4e-17 95.9 111 48.6
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 6.8e-17 93.6 110 50.0
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 1.1e-11 76.3 50 78.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 2.0e-08 65.5 45 77.8
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.7e-07 62.4 63 60.3
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 2.8e-07 61.6 34 88.2
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 3.1e-06 58.2 40 65.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 7.0e-06 57.0 38 76.3


User provided reference genes

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