Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 1.2e-161 573.2 302 100.0
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 7.8e-76 288.1 163 92.6
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 7.8e-76 288.1 163 92.6
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 4.3e-66 255.8 163 82.2
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 1.2e-65 254.2 163 81.0
BcaC08g44217 Brassica carinata HOM05D003556 ORTHO05D003404 1.8e-64 250.4 163 77.9
C06p16220 Brassica napus HOM05D003556 ORTHO05D003404 1.8e-64 250.4 163 77.9
BolC6t36819H Brassica oleracea HOM05D003556 ORTHO05D003404 1.8e-64 250.4 163 77.9
BraA05t20629Z Brassica rapa HOM05D003556 ORTHO05D003404 4.0e-64 249.2 163 77.9
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 6.8e-64 248.4 163 79.8
A05p17320 Brassica napus HOM05D003556 ORTHO05D003404 1.5e-63 247.3 163 77.3
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 2.0e-63 246.9 163 79.8
BcaB02g10800 Brassica carinata HOM05D003556 ORTHO05D003404 1.7e-62 243.8 163 77.3
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 1.6e-60 237.3 163 76.7
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 8.6e-59 231.5 163 74.8
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 5.6e-58 228.8 163 74.2
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 1.2e-57 227.6 163 75.5
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-57 227.6 163 75.5
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 2.3e-56 223.4 163 70.6
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 2.3e-56 223.4 163 73.6
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 6.2e-49 198.7 163 62.0
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 4.8e-33 146.0 164 51.2
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 6.2e-33 145.6 164 51.2
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 6.2e-33 145.6 164 51.8
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 1.8e-32 144.1 163 50.9
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 1.8e-32 144.1 163 50.9
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 3.1e-32 143.3 164 51.8
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 4.0e-32 142.9 164 51.8
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 5.3e-32 142.5 164 52.4
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 5.3e-32 142.5 164 52.4
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 5.3e-32 142.5 164 52.4
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 5.3e-32 142.5 164 52.4
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 5.3e-32 142.5 164 52.4
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 5.3e-32 142.5 164 50.0
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 6.9e-32 142.1 164 51.2
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 6.9e-32 142.1 164 51.2
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 6.9e-32 142.1 164 51.2
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 6.9e-32 142.1 164 51.2
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 6.9e-32 142.1 164 51.2
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 6.9e-32 142.1 164 51.2
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 9.0e-32 141.7 164 50.0
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 1.5e-31 141.0 164 49.4
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 2.0e-31 140.6 164 50.6
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 2.6e-31 140.2 138 54.3
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 4.5e-31 139.4 171 48.5
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 5.8e-31 139.0 164 49.4
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 2.4e-29 133.7 171 45.0
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 3.0e-27 126.7 128 54.7
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 2.5e-21 107.1 154 39.6
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 6.0e-20 102.4 167 40.1
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 1.8e-19 100.9 160 36.2
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 8.7e-19 98.6 158 37.3
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 1.1e-18 98.2 173 34.7
COL.COLO4_23319 Corchorus olitorius HOM05D003556 ORTHO05D003404 1.1e-18 98.2 160 36.2
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 1.5e-18 97.8 156 34.6
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 2.5e-18 97.1 167 38.3
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 7.4e-18 95.5 166 35.5
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 7.4e-18 95.5 162 35.2
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 8.2e-17 92.0 148 34.5
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 1.8e-16 90.9 165 36.4
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 4.1e-16 89.7 175 32.6
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 4.1e-16 89.7 144 36.1
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 9.0e-16 88.6 163 34.4
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 1.2e-15 88.2 170 35.3
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 2.0e-15 87.4 159 34.6
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.4e-15 86.7 148 32.4
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 5.9e-15 85.9 175 34.9
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 7.6e-15 85.5 162 34.0
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 1.0e-14 85.1 146 35.6
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 1.0e-14 85.1 161 33.5
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.3e-14 84.7 147 34.7
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 2.2e-14 84.0 140 35.0
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 2.2e-14 84.0 161 33.5
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 2.2e-14 84.0 168 34.5
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 2.9e-14 83.6 152 32.9
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 6.5e-14 82.4 141 31.9
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 6.5e-14 82.4 155 31.6
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 8.4e-14 82.0 165 32.1
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 1.1e-13 81.6 158 30.4
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 1.1e-13 81.6 158 32.3
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 1.4e-13 81.3 164 32.9
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 1.4e-13 81.3 138 32.6
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 1.4e-13 81.3 163 30.1
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.4e-13 81.3 163 35.0
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.9e-13 80.9 140 32.9
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 1.9e-13 80.9 170 34.7
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.5e-13 80.5 159 35.2
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 4.2e-13 79.7 176 30.1
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 5.5e-13 79.3 135 34.8
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 5.5e-13 79.3 138 34.8
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 5.5e-13 79.3 161 33.5
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 7.2e-13 79.0 134 31.3
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 7.2e-13 79.0 139 35.3
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 7.2e-13 79.0 159 32.1
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.2e-12 78.2 139 34.5
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 1.6e-12 77.8 151 35.1
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 2.1e-12 77.4 143 31.5
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 2.7e-12 77.0 144 33.3
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 4.6e-12 76.3 152 30.3
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 4.6e-12 76.3 162 32.1
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 6.1e-12 75.9 161 32.3
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 6.1e-12 75.9 161 31.7
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 6.1e-12 75.9 160 33.1
Gohir.A12G129100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 7.9e-12 75.5 159 32.1
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 7.9e-12 75.5 157 31.2
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 7.9e-12 75.5 194 28.4
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 1.0e-11 75.1 165 27.3
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 1.0e-11 75.1 137 31.4
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.3e-11 74.7 142 32.4
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-11 74.7 152 32.2
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-11 74.7 139 33.1
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-11 74.7 161 31.1
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 1.3e-11 74.7 147 30.6
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 2.3e-11 73.9 138 33.3
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 3.0e-11 73.6 169 32.5
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 3.0e-11 73.6 169 29.0
Ciclev10002648m.g Citrus clementina HOM05D003556 ORTHO05D003404 3.9e-11 73.2 166 30.1
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 3.9e-11 73.2 167 29.3
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 3.9e-11 73.2 161 32.3
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 1.1e-10 71.6 156 29.5
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.5e-10 71.2 158 29.7
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.9e-10 70.9 146 30.1
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.9e-10 70.9 138 35.5
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 1.9e-10 70.9 138 33.3
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 2.5e-10 70.5 154 29.9
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 2.5e-10 70.5 148 30.4
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 3.3e-10 70.1 153 28.8
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 3.3e-10 70.1 152 29.6
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 4.3e-10 69.7 161 31.7
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 4.3e-10 69.7 154 29.9
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 4.3e-10 69.7 138 31.9
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 5.7e-10 69.3 146 30.1
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 7.4e-10 68.9 167 31.1
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 9.7e-10 68.6 152 32.9
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 1.3e-09 68.2 151 30.5
TAR073G0001 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.6e-09 67.8 169 29.0
AUR62025555 Chenopodium quinoa HOM05D003556 ORTHO05D003404 2.8e-09 67.0 143 28.7
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 2.8e-09 67.0 160 33.1
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 3.7e-09 66.6 135 28.9
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 4.8e-09 66.2 138 31.9
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 4.8e-09 66.2 145 28.3
Cfa006645 Carpinus fangiana HOM05D014310 ORTHO05D003404 8.2e-09 65.5 143 30.1
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 1.1e-08 65.1 158 27.8
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 2.4e-08 63.9 144 27.8
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 3.1e-08 63.5 163 28.2
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 3.1e-08 63.5 154 29.9
Cfa006647 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.1e-08 63.2 165 28.5
AUR62008689 Chenopodium quinoa HOM05D003556 ORTHO05D003404 4.1e-08 63.2 143 27.3
CSS0025537 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 5.3e-08 62.8 150 30.0
CSS0050483 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 5.3e-08 62.8 150 30.0
TWI12G1373 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.3e-08 62.8 138 27.5
TWI60G0816 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.3e-08 62.8 138 27.5
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 6.9e-08 62.4 132 31.8
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 6.9e-08 62.4 146 28.1
Cfa006646 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.5e-07 61.2 152 28.3
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 2.6e-07 60.5 150 27.3
Eucgr.K03504 Eucalyptus grandis HOM05D003556 ORTHO05D003404 2.6e-07 60.5 132 30.3
Cfa014665 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.5e-07 59.7 148 28.4
Sed0028173 Sechium edule HOM05D003556 ORTHO05D003404 4.5e-07 59.7 135 25.9
COL.COLO4_17127 Corchorus olitorius HOM05D001445 ORTHO05D001261 5.9e-07 59.3 169 29.0
Haze_04119 Corylus avellana HOM05D014310 ORTHO05D003404 5.9e-07 59.3 146 29.5
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 7.7e-07 58.9 142 29.6
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 7.7e-07 58.9 139 30.9
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 1.0e-06 58.5 176 26.7
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 1.7e-06 57.8 149 28.2
Cc07_g18140 Coffea canephora HOM05D004113 ORTHO05D005233 2.2e-06 57.4 134 32.1
CANSAT54G1773 Cannabis sativa HOM05D003556 ORTHO05D003404 2.9e-06 57.0 169 30.2
Cfa014668 Carpinus fangiana HOM05D003556 ORTHO05D003404 2.9e-06 57.0 148 27.0
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 3.8e-06 56.6 141 28.4
DCAR_002850 Daucus carota HOM05D003556 ORTHO05D003404 3.8e-06 56.6 164 25.0
CiPaw.07G023600 Carya illinoinensis HOM05D003556 ORTHO05D003404 5.0e-06 56.2 170 27.6
Dinv28905 Davidia involucrata HOM05D001445 ORTHO05D001261 5.0e-06 56.2 134 32.1
Thecc.03G235400 Theobroma cacao HOM05D001445 ORTHO05D001261 6.5e-06 55.8 132 33.3
TAR375G0246 Trochodendron aralioides HOM05D001445 ORTHO05D001261 6.5e-06 55.8 162 27.8
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 8.5e-06 55.5 149 26.2


User provided reference genes

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