Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-108 396.4 212 100.0
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 8.7e-82 307.4 219 80.8
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-69 265.0 196 78.6
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 4.9e-69 265.0 196 78.6
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.1e-68 263.8 209 74.6
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-66 256.9 192 77.1
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 6.7e-66 254.6 192 77.1
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.1e-65 253.8 201 74.1
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 7.4e-65 251.1 204 72.1
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-64 250.4 201 72.1
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-63 246.9 200 72.0
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 3.1e-63 245.7 204 70.6
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.2e-62 243.8 188 77.1
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 2.9e-61 239.2 189 72.5
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 4.6e-59 231.9 190 73.2
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.5e-57 226.1 190 70.0
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-56 223.8 176 72.7
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 8.2e-56 221.1 188 71.3
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-54 217.2 142 85.9
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 7.2e-52 208.0 205 63.9
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 8.8e-50 201.1 200 64.5
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.5e-49 200.3 205 62.4
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.3e-48 197.2 194 61.3
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.3e-48 197.2 204 59.3
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-47 192.2 193 62.2
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-46 190.7 195 61.5
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.2e-46 190.7 195 61.5
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 1.0e-45 187.6 103 94.2
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.6e-43 180.3 187 59.9
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.0e-42 177.6 195 56.9
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 4.8e-40 168.7 186 53.2
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 8.2e-40 167.9 203 55.7
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.8e-39 166.8 194 54.1
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.4e-39 166.4 190 53.7
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 4.1e-39 165.6 196 55.1
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 4.1e-39 165.6 196 52.0
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 5.3e-39 165.2 187 57.8
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.6e-38 163.7 191 53.9
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.0e-38 163.3 196 54.1
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.0e-38 163.3 192 53.6
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 2.6e-38 162.9 186 53.8
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 5.9e-38 161.8 176 55.1
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 5.9e-38 161.8 195 51.8
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.3e-37 160.6 195 51.3
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.2e-37 159.8 178 56.7
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.9e-37 159.5 191 52.4
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.8e-37 159.1 173 58.4
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 3.8e-37 159.1 189 51.9
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 6.5e-37 158.3 195 51.3
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.1e-36 157.5 195 51.8
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.1e-36 157.5 172 55.8
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.5e-36 157.1 188 53.2
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.5e-36 157.1 195 51.8
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.2e-36 155.6 194 51.0
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 4.2e-36 155.6 193 50.3
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.2e-36 155.6 190 51.1
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 5.5e-36 155.2 181 53.6
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 5.5e-36 155.2 193 53.4
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 7.2e-36 154.8 191 52.9
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 9.4e-36 154.5 170 55.3
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 9.4e-36 154.5 172 55.2
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 9.4e-36 154.5 172 55.2
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.2e-35 154.1 88 93.2
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.2e-35 154.1 194 50.0
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.6e-35 153.7 183 53.6
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.6e-35 153.7 192 54.2
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 2.7e-35 152.9 201 47.8
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 2.7e-35 152.9 194 49.0
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.6e-35 152.5 190 50.5
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 6.1e-35 151.8 190 50.5
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.1e-35 151.8 191 49.7
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.1e-35 151.8 190 50.0
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 6.1e-35 151.8 195 51.8
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 8.0e-35 151.4 170 56.5
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.8e-34 150.2 171 55.0
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 1.8e-34 150.2 230 43.5
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 2.3e-34 149.8 173 53.2
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 2.3e-34 149.8 228 45.6
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 3.0e-34 149.4 152 62.5
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.0e-34 149.4 191 49.2
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 3.0e-34 149.4 188 49.5
A07p17600 Brassica napus HOM05D003513 ORTHO05D013524 4.0e-34 149.1 119 70.6
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 4.0e-34 149.1 193 50.3
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 4.0e-34 149.1 166 53.6
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 5.2e-34 148.7 188 50.0
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 6.7e-34 148.3 234 43.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 6.7e-34 148.3 229 47.2
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 6.7e-34 148.3 185 51.4
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 8.8e-34 147.9 209 47.8
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.1e-33 147.5 222 44.1
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.1e-33 147.5 190 53.2
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.1e-33 147.5 173 53.8
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.5e-33 147.1 222 44.6
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.5e-33 147.1 168 51.8
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.6e-33 146.4 194 49.0
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 3.3e-33 146.0 203 46.3
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 3.3e-33 146.0 171 53.8
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 5.7e-33 145.2 181 50.3
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 7.5e-33 144.8 222 44.6
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 7.5e-33 144.8 195 48.7
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 7.5e-33 144.8 208 47.1
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 1.3e-32 144.1 191 50.3
A03p63010 Brassica napus HOM05D003513 ORTHO05D013524 1.3e-32 144.1 119 70.6
C07p28040 Brassica napus HOM05D003513 ORTHO05D013524 1.3e-32 144.1 119 70.6
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.8e-32 142.9 172 52.9
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.7e-32 142.5 97 80.4
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.7e-32 142.5 235 42.6
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 4.8e-32 142.1 179 48.6
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.3e-32 141.7 110 70.9
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.3e-32 141.7 184 51.1
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.1e-31 141.0 172 52.9
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.4e-31 140.6 192 50.5
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.4e-31 140.6 175 52.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.4e-31 140.6 176 52.3
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.8e-31 140.2 125 67.2
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 3.1e-31 139.4 87 86.2
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 4.1e-31 139.0 170 51.8
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 7.0e-31 138.3 187 46.5
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.2e-30 137.5 160 55.6
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 2.0e-30 136.7 193 46.6
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.0e-30 136.7 200 46.0
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.0e-30 136.7 179 47.5
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.5e-30 136.0 227 40.5
A04p12810 Brassica napus HOM05D003513 ORTHO05D013524 4.5e-30 135.6 139 61.9
A06p18750 Brassica napus HOM05D003513 ORTHO05D013524 4.5e-30 135.6 139 61.9
BraA04t16944Z Brassica rapa HOM05D003513 ORTHO05D013524 4.5e-30 135.6 139 61.9
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 2.2e-29 133.3 228 42.5
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 2.9e-29 132.9 157 56.7
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 3.2e-28 129.4 210 42.9
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 3.2e-28 129.4 174 49.4
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 2.7e-27 126.3 153 52.9
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 2.7e-27 126.3 167 45.5
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.0e-26 124.4 154 55.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.0e-26 124.4 236 40.3
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.8e-26 123.6 175 47.4
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 3.0e-26 122.9 156 51.3
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 6.8e-26 121.7 66 92.4
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 6.8e-26 121.7 66 92.4
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.5e-25 120.6 194 45.9
A06p48950 Brassica napus HOM05D003513 ORTHO05D013524 3.4e-25 119.4 93 69.9
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.4e-25 119.4 207 41.1
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.7e-24 117.1 191 42.9
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.8e-24 116.3 183 42.1
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 4.8e-24 115.5 185 42.2
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.3e-24 115.2 170 42.4
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 4.1e-23 112.5 134 54.5
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 7.0e-23 111.7 196 42.3
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-21 106.3 62 90.3
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-21 106.3 62 90.3
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-21 106.3 62 90.3
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-21 106.3 62 90.3
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 2.9e-21 106.3 196 38.3
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-21 105.9 67 83.6
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.2e-20 102.4 197 39.1
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.2e-20 102.4 197 39.1
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-20 102.4 60 88.3
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-20 102.4 56 94.6
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-19 100.9 56 92.9
BraA05t21193Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-19 100.9 77 74.0
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.7e-19 99.8 194 39.2
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.0e-18 97.8 186 41.4
A09p57370 Brassica napus HOM05D003513 ORTHO05D004660 5.2e-18 95.5 54 88.9
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 2.6e-17 93.2 74 62.2
A08p11950 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-16 90.9 102 56.9
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 1.3e-16 90.9 136 47.1
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 2.8e-16 89.7 54 85.2
BcaB02g08136 Brassica carinata HOM05D003513 ORTHO05D004660 8.3e-16 88.2 54 87.0
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 9.2e-15 84.7 124 49.2
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.3e-13 80.9 117 44.4
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.8e-13 79.3 47 85.1
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.2e-11 74.3 130 43.1
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.6e-11 73.9 135 40.7
A04p12820 Brassica napus HOM05D003513 ORTHO05D004660 8.0e-11 71.6 37 91.9
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.0e-10 71.2 130 41.5
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.8e-10 70.5 51 68.6
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.3e-10 70.1 51 66.7
A05p38730 Brassica napus HOM05D000051 ORTHO05D033618 6.8e-10 68.6 40 82.5
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 8.9e-10 68.2 58 62.1
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.2e-09 67.8 123 45.5
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 2.6e-09 66.6 38 86.8
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 1.7e-08 63.9 50 70.0
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 2.2e-08 63.5 37 75.7
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.9e-08 63.2 106 44.3
C06p18700 Brassica napus HOM05D003513 ORTHO05D013524 6.4e-08 62.0 33 84.8
BraA09t39125Z Brassica rapa HOM05D003513 ORTHO05D013524 6.4e-08 62.0 33 84.8
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.4e-07 60.8 49 61.2
BraA07t29479Z Brassica rapa HOM05D003513 ORTHO05D013524 2.4e-07 60.1 33 81.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 1.6e-06 57.4 103 45.6
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 2.7e-06 56.6 163 30.1
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 5.9e-06 55.5 29 89.7


User provided reference genes

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