Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 8.5e-105 383.6 190 100.0
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.3e-94 349.0 192 91.1
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.3e-94 349.0 192 91.1
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 3.4e-93 345.1 196 89.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 3.4e-93 345.1 196 89.8
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 2.2e-92 342.4 196 89.3
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.7e-87 324.7 203 81.8
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.6e-82 309.7 203 77.3
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.5e-80 303.1 200 77.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.9e-80 302.8 202 76.7
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.3e-80 302.0 199 79.4
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.6e-74 281.6 202 73.3
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 6.0e-66 254.6 202 65.3
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 7.6e-61 237.7 197 64.5
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 9.9e-61 237.3 197 62.9
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.9e-60 235.7 199 61.3
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 6.4e-60 234.6 196 60.7
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.2e-59 232.3 199 60.8
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.2e-59 231.9 198 64.6
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 7.8e-58 227.6 196 60.2
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 7.8e-58 227.6 202 57.9
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 5.1e-57 224.9 197 59.9
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 6.6e-57 224.6 199 57.8
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.2e-55 218.0 202 57.9
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 6.2e-55 218.0 199 56.3
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.1e-55 217.6 202 57.9
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.4e-54 216.9 197 57.9
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.0e-54 215.3 200 56.5
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 5.3e-54 214.9 202 59.4
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 5.3e-54 214.9 202 59.4
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 5.3e-54 214.9 202 59.4
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 5.3e-54 214.9 207 55.6
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.3e-54 214.9 202 57.4
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-53 213.0 202 56.4
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.6e-53 212.6 202 56.9
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.4e-53 212.2 202 55.4
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 3.4e-53 212.2 203 56.7
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 4.4e-53 211.8 204 54.4
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 7.6e-53 211.1 202 58.4
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 7.6e-53 211.1 202 58.4
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.6e-53 211.1 209 56.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.6e-53 211.1 202 55.4
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 9.9e-53 210.7 200 55.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.7e-52 209.9 202 55.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.2e-52 209.5 206 55.3
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.9e-52 209.1 204 53.9
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 4.9e-52 208.4 202 54.5
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.1e-51 207.2 204 54.9
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.1e-51 207.2 207 54.1
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-51 206.5 204 56.9
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.9e-51 206.5 201 55.7
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 4.2e-51 205.3 204 53.4
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 5.4e-51 204.9 200 55.5
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 5.4e-51 204.9 211 55.0
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 7.1e-51 204.5 203 54.7
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 7.9e-50 201.1 199 57.3
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 7.9e-50 201.1 203 53.7
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.0e-49 200.7 205 54.6
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.0e-49 200.7 200 53.5
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.7e-49 199.9 205 52.2
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.7e-49 199.9 195 55.9
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 2.3e-49 199.5 201 54.7
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 6.6e-49 198.0 204 54.9
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 6.6e-49 198.0 203 54.2
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 8.7e-49 197.6 195 54.4
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.5e-48 196.8 198 55.1
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.9e-48 196.4 201 54.7
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.9e-48 196.4 201 54.7
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.9e-48 196.4 198 49.5
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.9e-48 196.4 200 54.0
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.5e-48 196.1 203 53.2
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 5.6e-48 194.9 206 51.9
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.1e-47 193.0 201 54.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.1e-47 193.0 204 51.5
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 3.6e-47 192.2 201 53.7
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.6e-47 192.2 198 50.0
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.8e-47 191.8 198 54.0
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 8.1e-47 191.0 206 51.5
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.1e-46 190.7 208 51.4
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.1e-46 190.7 198 49.5
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-46 189.9 218 49.1
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.8e-46 189.9 203 53.7
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.8e-46 189.9 203 53.7
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 3.1e-46 189.1 214 49.1
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.1e-46 189.1 198 48.0
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 3.1e-46 189.1 204 52.9
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.0e-46 188.7 198 50.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.0e-46 188.7 198 50.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.3e-46 188.3 197 53.8
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 5.3e-46 188.3 205 53.2
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 5.3e-46 188.3 200 51.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 6.9e-46 188.0 196 55.1
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 9.0e-46 187.6 205 49.8
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 2.6e-45 186.0 201 52.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.6e-45 184.5 198 52.5
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 7.6e-45 184.5 218 49.5
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.3e-44 183.7 188 50.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.7e-44 183.3 200 54.0
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.2e-44 183.0 196 49.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 4.9e-44 181.8 203 51.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 4.9e-44 181.8 207 49.3
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 4.9e-44 181.8 192 52.1
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 6.4e-44 181.4 207 50.2
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 6.4e-44 181.4 203 50.7
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 6.4e-44 181.4 203 50.7
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 2.4e-43 179.5 196 52.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.4e-43 179.5 206 49.0
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.4e-43 179.5 202 50.5
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.4e-43 179.5 195 51.8
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 3.2e-43 179.1 203 49.3
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.2e-43 179.1 206 49.0
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.6e-42 176.8 261 42.1
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.1e-42 176.4 206 51.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.1e-42 176.4 206 50.0
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.7e-42 176.0 207 51.2
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 7.9e-42 174.5 193 49.2
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.0e-41 174.1 193 47.7
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.3e-41 173.7 206 48.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.8e-41 173.3 274 40.9
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 2.3e-41 172.9 221 46.2
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.1e-41 171.8 191 49.7
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.5e-40 170.2 193 49.7
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.6e-39 166.8 205 46.8
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.8e-39 166.0 209 45.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-38 163.7 207 45.9
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.4e-38 163.7 200 48.5
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.0e-38 162.2 181 48.1
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 9.0e-38 161.0 202 45.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 4.5e-37 158.7 196 47.4
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 4.5e-37 158.7 202 50.5
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.8e-37 158.3 115 68.7
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 5.8e-37 158.3 153 55.6
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.7e-36 156.8 201 47.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.4e-35 153.7 120 67.5
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.5e-35 152.9 200 45.0
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.2e-35 152.5 121 66.9
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 6.0e-34 148.3 150 52.0
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 6.0e-34 148.3 199 43.7
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 7.9e-34 147.9 329 34.0
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 5.1e-33 145.2 89 74.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.5e-32 143.7 192 46.9
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.9e-32 143.3 203 42.9
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 6.9e-30 134.8 92 68.5
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 7.6e-29 131.3 104 60.6
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.2e-28 129.8 179 43.0
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 5.0e-28 128.6 118 55.1
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 4.2e-27 125.6 119 54.6
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 9.3e-27 124.4 154 50.6
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.2e-26 124.0 117 52.1
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 6.7e-25 118.2 153 42.5
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.1e-24 117.5 152 44.7
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 2.5e-24 116.3 126 46.8
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.5e-24 116.3 200 37.0
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 7.4e-24 114.8 153 47.1
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 2.2e-23 113.2 162 43.8
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.5e-21 107.1 156 45.5
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.6e-18 97.1 161 41.0
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.1e-18 96.7 148 41.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.1e-14 84.3 73 57.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 9.1e-14 81.3 44 86.4
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 7.7e-13 78.2 95 47.4
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.7e-12 77.0 64 60.9
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 8.5e-12 74.7 44 75.0
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 8.5e-12 74.7 44 75.0
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 4.2e-11 72.4 49 65.3
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 9.4e-11 71.2 121 37.2
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.6e-10 70.5 190 34.7
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 2.7e-10 69.7 84 44.0
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.8e-09 67.0 97 42.3
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 1.8e-09 67.0 97 42.3
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-09 67.0 97 42.3
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.8e-09 67.0 97 42.3
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 6.3e-07 58.5 83 41.0
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 4.1e-06 55.8 80 42.5


User provided reference genes

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