Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.4e-151 539.7 280 100.0
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 5.6e-137 491.1 283 91.2
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 5.6e-137 491.1 283 91.2
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 3.6e-136 488.4 281 90.0
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 6.2e-136 487.6 283 89.8
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.1e-135 486.9 282 89.0
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-135 486.1 281 90.0
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.8e-135 486.1 281 90.0
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.8e-135 486.1 281 90.0
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 9.9e-134 480.3 282 89.0
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 9.9e-134 480.3 282 87.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 8.4e-133 477.2 284 88.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.2e-131 473.4 282 86.2
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.7e-131 472.2 289 86.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.7e-131 472.2 289 86.9
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 4.6e-131 471.5 283 87.3
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.9e-129 466.1 283 87.3
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 5.4e-124 448.0 280 82.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 5.1e-106 388.3 284 75.0
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 6.9e-103 377.9 281 70.1
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 4.9e-101 371.7 265 74.3
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.4e-100 370.2 237 77.2
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 3.2e-100 369.0 282 69.5
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 9.3e-100 367.5 278 70.1
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 9.3e-100 367.5 278 69.8
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 6.1e-99 364.8 285 67.7
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.0e-98 364.0 253 73.9
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.3e-98 363.6 284 68.3
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.8e-98 363.2 284 68.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.8e-98 363.2 281 69.4
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.3e-98 362.8 250 73.6
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.3e-98 362.8 287 65.5
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.0e-98 362.5 277 69.7
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 3.9e-98 362.1 202 90.1
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.9e-98 362.1 287 67.6
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.9e-98 362.1 255 71.4
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 5.1e-98 361.7 276 69.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 6.7e-98 361.3 284 65.8
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 6.7e-98 361.3 230 78.7
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 6.7e-98 361.3 285 66.3
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.1e-97 360.5 281 68.7
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.5e-97 360.1 257 72.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.5e-97 360.1 256 70.3
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.9e-97 359.8 273 67.8
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.9e-97 359.8 252 73.4
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.9e-97 359.8 239 77.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 2.5e-97 359.4 230 78.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 5.7e-97 358.2 270 68.5
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 7.4e-97 357.8 239 75.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 7.4e-97 357.8 279 67.4
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.4e-97 357.8 229 76.9
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 7.4e-97 357.8 285 64.9
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 9.7e-97 357.5 237 75.5
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.3e-96 357.1 285 68.8
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-96 356.7 231 75.3
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.6e-96 356.7 238 75.6
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-96 355.9 252 72.6
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.8e-96 355.1 270 68.5
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.8e-96 355.1 270 67.8
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 6.3e-96 354.8 231 76.6
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.1e-95 354.0 276 68.1
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-95 353.6 228 78.1
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.8e-95 353.2 281 67.3
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 2.4e-95 352.8 254 71.7
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 9.0e-95 350.9 229 77.3
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.2e-94 350.5 254 71.7
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.5e-94 350.1 251 73.3
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 2.0e-94 349.7 283 66.4
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.0e-94 349.7 237 75.1
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.6e-94 349.4 230 75.7
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 3.4e-94 349.0 231 74.5
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 3.4e-94 349.0 231 74.5
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.5e-94 348.6 288 64.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.9e-94 348.2 278 67.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 7.7e-94 347.8 256 69.5
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.0e-93 347.4 288 63.9
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.0e-93 347.4 279 67.0
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.2e-93 346.3 260 68.8
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.2e-93 346.3 284 64.8
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 3.8e-93 345.5 256 70.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.8e-93 345.5 276 65.6
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 6.5e-93 344.7 284 64.8
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.1e-92 344.0 283 66.4
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.4e-92 343.6 288 64.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.5e-92 342.8 234 72.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.2e-91 340.5 286 63.3
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.7e-91 339.3 255 67.8
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.6e-91 339.0 255 68.2
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 3.6e-91 339.0 262 69.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.6e-91 338.6 260 66.9
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.6e-91 338.6 230 72.6
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 7.9e-91 337.8 257 68.1
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.0e-90 337.4 224 76.3
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.8e-90 336.7 224 77.7
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 8.8e-90 334.3 239 70.3
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.7e-89 331.6 252 68.7
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.3e-88 330.5 230 72.6
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.2e-88 329.7 240 72.1
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 8.2e-88 327.8 249 67.1
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 8.2e-88 327.8 234 70.9
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-87 327.4 260 66.2
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 5.3e-87 325.1 245 67.3
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 5.9e-86 321.6 286 61.9
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.3e-85 320.5 269 61.3
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.3e-85 320.5 290 61.7
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 3.8e-85 318.9 234 67.9
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 6.5e-85 318.2 230 72.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 5.5e-84 315.1 252 63.9
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-82 310.5 199 76.9
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.9e-82 308.9 264 61.7
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.5e-81 307.0 235 64.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.0e-81 306.6 229 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.3e-80 303.9 230 67.8
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 4.8e-80 302.0 201 76.1
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 9.1e-79 297.7 278 60.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 9.1e-79 297.7 244 63.9
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.9e-78 295.0 230 66.5
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 7.7e-78 294.7 199 70.9
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 5.0e-77 292.0 199 74.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.6e-75 287.0 199 72.4
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 4.7e-75 285.4 239 63.2
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 5.2e-74 282.0 228 65.8
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.7e-74 281.6 191 74.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.7e-74 281.6 201 71.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 7.4e-73 278.1 200 70.0
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 4.8e-72 275.4 234 61.5
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-71 273.9 201 68.7
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 7.0e-71 271.6 187 71.7
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.3e-69 267.3 229 62.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 2.9e-69 266.2 225 62.2
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.7e-64 249.2 167 74.9
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.0e-61 241.1 230 56.1
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.5e-60 237.3 185 68.1
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 3.2e-60 236.1 238 52.5
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.7e-56 222.6 286 47.2
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.0e-54 216.9 138 75.4
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.5e-49 200.7 146 67.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 4.9e-48 195.7 146 68.5
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.6e-46 190.7 152 63.8
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.2e-43 181.0 209 49.8
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.9e-42 174.9 131 67.9
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-40 170.6 131 67.9
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.5e-38 162.9 133 63.9
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.7e-37 160.6 158 56.3
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-35 154.1 102 75.5
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-35 154.1 102 75.5
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.7e-32 142.9 115 67.0
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 3.5e-30 136.3 123 57.7
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.9e-28 130.6 157 47.8
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.6e-28 129.0 74 86.5
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.1e-27 127.1 74 85.1
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.8e-27 126.7 74 85.1
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.6e-27 126.3 74 85.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.4e-26 124.4 74 82.4
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.4e-24 115.5 203 35.0
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.3e-20 102.1 70 71.4
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 8.1e-19 98.6 64 75.0
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 8.9e-18 95.1 90 56.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 2.9e-16 90.1 63 73.0
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.8e-16 89.7 66 69.7
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.4e-16 88.6 64 70.3
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 5.1e-13 79.3 64 65.6
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 8.7e-13 78.6 44 86.4
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 9.6e-12 75.1 44 79.5
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.6e-11 74.3 46 80.4
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-09 67.8 64 56.2
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 3.4e-09 66.6 61 55.7
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 2.9e-08 63.5 37 73.0
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 2.9e-08 63.5 37 73.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.4e-07 60.5 209 27.3


User provided reference genes

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