Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 0.0e+00 1328.2 682 100.0
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 0.0e+00 1297.7 682 97.9
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 0.0e+00 1296.6 682 97.8
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 0.0e+00 1294.3 682 97.7
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 0.0e+00 1294.3 682 97.7
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 0.0e+00 1276.9 682 96.5
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 0.0e+00 1276.5 682 96.3
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 0.0e+00 1258.0 682 94.7
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 0.0e+00 1257.3 682 94.4
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 0.0e+00 1253.0 682 94.1
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 0.0e+00 1246.5 683 94.0
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 0.0e+00 1241.9 682 93.4
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 0.0e+00 1205.7 682 90.8
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 0.0e+00 1146.7 685 85.0
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 3.3e-300 1034.6 691 76.6
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 1.8e-298 1028.9 692 76.0
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 3.1e-298 1028.1 691 76.6
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 1.2e-297 1026.2 695 76.3
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 5.8e-297 1023.8 697 76.2
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 4.9e-296 1020.8 694 75.1
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.4e-295 1019.2 694 75.1
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.9e-295 1018.8 691 75.8
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 4.6e-294 1014.2 695 75.5
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.0e-293 1011.5 691 75.0
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.5e-292 1009.2 689 75.6
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 1.9e-292 1008.8 698 74.8
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 1.9e-292 1008.8 691 74.5
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 5.7e-292 1007.3 691 75.1
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 6.3e-291 1003.8 687 75.0
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 6.3e-291 1003.8 696 74.9
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 6.9e-290 1000.3 691 74.7
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 2.6e-289 998.4 687 75.7
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 2.6e-289 998.4 696 74.1
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 2.6e-289 998.4 692 74.3
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 3.4e-289 998.0 690 74.9
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.0e-288 996.5 695 74.5
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 1.0e-288 996.5 735 72.0
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.3e-288 996.1 685 75.9
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 3.8e-288 994.6 684 74.6
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 5.0e-288 994.2 692 73.4
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 2.5e-287 991.9 698 73.9
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.2e-287 991.5 697 73.6
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 3.2e-287 991.5 731 70.9
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 5.5e-287 990.7 692 73.3
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 5.5e-287 990.7 695 73.4
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 7.2e-287 990.3 689 73.3
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 9.4e-287 989.9 694 73.3
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 1.2e-286 989.6 696 73.0
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 2.1e-286 988.8 697 73.9
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 2.7e-286 988.4 696 73.3
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 3.6e-286 988.0 690 74.3
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 1.8e-285 985.7 693 73.4
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 2.3e-285 985.3 692 72.7
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 3.0e-285 984.9 697 72.7
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 3.9e-285 984.6 694 73.3
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.8e-285 983.4 685 75.0
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 3.3e-284 981.5 693 73.0
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.4e-284 980.3 685 74.7
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.7e-283 979.2 697 72.6
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 2.8e-283 978.4 692 72.0
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 2.8e-283 978.4 691 72.5
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 2.8e-283 978.4 693 72.9
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 1.8e-282 975.7 690 73.6
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 5.3e-282 974.2 695 72.2
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.7e-280 969.1 694 71.3
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 3.8e-280 968.0 693 73.6
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.4e-279 966.1 689 73.0
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 1.6e-278 962.6 704 70.7
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 2.7e-278 961.8 680 73.4
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 7.9e-278 960.3 695 71.4
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 2.6e-276 955.3 741 67.9
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.7e-275 951.4 694 71.0
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 1.4e-274 949.5 722 67.9
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.2e-273 946.4 694 70.3
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 7.7e-273 943.7 798 64.5
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 1.3e-272 943.0 693 71.3
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 5.0e-272 941.0 696 70.5
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.4e-271 939.5 692 70.5
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 7.4e-268 927.2 691 70.8
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.2e-267 925.6 693 69.6
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 2.2e-267 925.6 648 73.8
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 3.7e-267 924.9 693 69.1
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 2.2e-264 915.6 694 68.2
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.0e-253 880.2 680 67.8
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 1.0e-248 863.6 702 65.2
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.7e-243 845.1 689 64.6
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.5e-239 833.2 1199 44.4
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 4.0e-237 825.1 554 78.2
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 3.0e-232 808.9 716 60.3
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 8.3e-227 790.8 768 59.2
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.1e-226 788.5 569 71.2
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 5.1e-224 781.6 720 57.1
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 5.4e-218 761.5 535 75.1
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 4.3e-207 725.3 511 72.8
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 4.7e-206 721.8 469 78.3
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 9.6e-199 697.6 514 69.8
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.6e-198 696.8 694 55.3
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 2.8e-198 696.0 641 57.1
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 3.4e-180 636.0 419 76.6
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.1e-141 506.5 705 42.4
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 3.1e-133 479.9 704 41.5
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 4.5e-132 476.1 699 40.5
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.4e-120 438.0 685 42.6
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 5.0e-115 419.5 473 49.9
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 8.6e-115 418.7 270 77.4
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.8e-104 382.5 686 39.4
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 9.9e-103 378.6 275 76.0
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.6e-95 352.4 232 77.2
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 2.9e-94 350.5 421 50.8
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 9.6e-90 335.5 653 38.3
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.6e-84 318.2 676 34.9
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.6e-81 308.1 244 67.2
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 3.4e-71 273.9 218 67.4
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 1.3e-70 271.9 293 54.3
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 2.7e-60 237.7 201 64.2
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 4.3e-58 230.3 167 66.5
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 2.2e-46 191.4 143 71.3
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 2.2e-46 191.4 143 71.3
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 1.2e-36 159.1 122 69.7
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 4.1e-32 144.1 99 72.7
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 7.7e-31 139.8 115 60.9
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.5e-26 125.6 84 70.2
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 6.1e-20 103.6 207 38.6
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 1.1e-16 92.8 64 70.3
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 2.7e-15 88.2 143 38.5
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.9e-14 84.7 83 60.2


User provided reference genes

Program Settings