Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32802 Brassica carinata HOM05D001222 ORTHO05D012018 4.5e-59 231.1 120 100.0
Thhalv10007690m.g Eutrema salsugineum HOM05D001222 ORTHO05D001195 4.4e-30 134.8 125 64.0
Sp1g27240 Schrenkiella parvula HOM05D001222 ORTHO05D001195 4.8e-29 131.3 118 66.1
AT1G31440 Arabidopsis thaliana HOM05D001222 ORTHO05D001195 2.6e-27 125.6 125 60.0
Carub.0001s2986 Capsella rubella HOM05D001222 ORTHO05D001195 1.0e-26 123.6 124 59.7
BcaB04g18155 Brassica carinata HOM05D001222 ORTHO05D001195 1.5e-25 119.8 134 56.7
BcaC07g37756 Brassica carinata HOM05D001222 ORTHO05D012018 4.2e-25 118.2 127 59.8
BolC8t48141H Brassica oleracea HOM05D001222 ORTHO05D001195 4.2e-25 118.2 127 59.8
BraA08t33054Z Brassica rapa HOM05D001222 ORTHO05D001195 5.5e-25 117.9 127 59.1
CARHR030960 Cardamine hirsuta HOM05D001222 ORTHO05D001195 1.2e-24 116.7 125 56.0
A08p10550 Brassica napus HOM05D001222 ORTHO05D001195 2.1e-24 115.9 126 58.7
Aa31LG2G14510 Aethionema arabicum HOM05D001222 ORTHO05D001195 5.7e-22 107.8 120 54.2
AL1G49610 Arabidopsis lyrata HOM05D001222 ORTHO05D001195 1.7e-21 106.3 115 58.3
THA.LOC104814378 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 4.2e-17 91.7 120 49.2
THA.LOC104798538 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 2.7e-16 89.0 120 49.2
Aa31LG3G7730 Aethionema arabicum HOM05D001222 ORTHO05D001195 2.0e-14 82.8 117 47.0
C05p30690 Brassica napus HOM05D001222 ORTHO05D032971 5.4e-12 74.7 98 49.0
Duzib205G0677 Durio zibethinus HOM05D001222 ORTHO05D001195 3.5e-11 72.0 119 38.7
Potri.003G105200 Populus trichocarpa HOM05D001222 ORTHO05D001195 5.0e-10 68.2 123 35.0
Manes.17G005400 Manihot esculenta HOM05D001222 ORTHO05D001195 6.6e-10 67.8 124 33.9
Cpa.g.sc463.1 Carica papaya HOM05D001222 ORTHO05D033652 1.1e-09 67.0 62 54.8
Thecc.03G323700 Theobroma cacao HOM05D001222 ORTHO05D001195 1.1e-09 67.0 119 37.8
COL.COLO4_16713 Corchorus olitorius HOM05D001222 ORTHO05D001195 1.9e-09 66.2 119 38.7
Gohir.A05G276400 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.5e-09 65.9 62 53.2
Gohir.D05G278100 Gossypium hirsutum HOM05D001222 ORTHO05D001195 2.5e-09 65.9 62 53.2
Gorai.009G291600 Gossypium raimondii HOM05D001222 ORTHO05D001195 2.5e-09 65.9 62 53.2
Lalb_Chr16g0380591 Lupinus albus HOM05D001222 ORTHO05D001195 7.2e-09 64.3 65 52.3
Psat2g143480 Pisum sativum HOM05D001222 ORTHO05D001195 2.8e-08 62.4 119 33.6
CsaV3_4G037930 Cucumis sativus L. HOM05D001222 ORTHO05D001195 4.7e-08 61.6 69 44.9
ClCG11G016230 Citrullus lanatus HOM05D001222 ORTHO05D001195 8.0e-08 60.8 69 44.9
MELO3C010543.2 Cucumis melo HOM05D001222 ORTHO05D001195 8.0e-08 60.8 69 43.5
TAR629G0053 Trochodendron aralioides HOM05D001222 ORTHO05D001195 8.0e-08 60.8 124 31.5
Phvul.002G125000 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 1.0e-07 60.5 65 49.2
Ca_25076_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 1.4e-07 60.1 65 49.2
TWI34G1823 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 1.4e-07 60.1 97 39.2
VMungo1215G3356 Vigna mungo HOM05D001222 ORTHO05D001195 1.4e-07 60.1 65 50.8
Glyma.01G150800 Glycine max HOM05D001222 ORTHO05D001195 1.8e-07 59.7 65 49.2
Atru.chr6.2118 Acer truncatum HOM05D001222 ORTHO05D001195 2.3e-07 59.3 106 32.1
Glyma.09G215800 Glycine max HOM05D001222 ORTHO05D001195 2.3e-07 59.3 65 49.2
Potri.001G128800 Populus trichocarpa HOM05D001222 ORTHO05D001195 2.3e-07 59.3 119 31.9
Medtr5g026400 Medicago truncatula HOM05D001222 ORTHO05D001195 4.0e-07 58.5 122 32.8
TPR.G17279 Trifolium pratense HOM05D001222 ORTHO05D001195 4.0e-07 58.5 65 46.2
arahy.Tifrunner.gnm1.ann1.QJ9BXX Arachis hypogaea HOM05D001222 ORTHO05D001195 5.2e-07 58.2 65 49.2
arahy.Tifrunner.gnm1.ann1.VGJ3AW Arachis hypogaea HOM05D001222 ORTHO05D001195 5.2e-07 58.2 65 49.2
Haze_08006 Corylus avellana HOM05D001222 ORTHO05D001195 6.8e-07 57.8 65 49.2
CAN.G1214.3 Capsicum annuum HOM05D001222 ORTHO05D001195 1.2e-06 57.0 101 38.6
PGR042G1368 Punica granatum HOM05D001222 ORTHO05D001195 1.2e-06 57.0 60 48.3
TWI32G1227 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 1.2e-06 57.0 119 33.6
Lj2g0014930 Lotus japonicus HOM05D001222 ORTHO05D001195 2.0e-06 56.2 65 46.2
Sabra03G0072200 Salix brachista HOM05D001222 ORTHO05D001195 2.6e-06 55.8 69 42.0
QL02p100040 Quercus lobata HOM05D001222 ORTHO05D001195 3.4e-06 55.5 65 47.7
CANSAT21G0591 Cannabis sativa HOM05D001222 ORTHO05D001195 4.4e-06 55.1 65 46.2
CANSAT21G0859 Cannabis sativa HOM05D001222 ORTHO05D001195 4.4e-06 55.1 65 46.2
Eucgr.E01201 Eucalyptus grandis HOM05D001222 ORTHO05D001195 4.4e-06 55.1 119 31.9
Solyc08g074780.3 Solanum lycopersicum HOM05D001222 ORTHO05D001195 4.4e-06 55.1 66 47.0
Sopen08g023370 Solanum pennellii HOM05D001222 ORTHO05D001195 4.4e-06 55.1 66 47.0
PGSC0003DMG400030067 Solanum tuberosum HOM05D001222 ORTHO05D001195 5.7e-06 54.7 101 36.6
Sabra01G0099100 Salix brachista HOM05D001222 ORTHO05D001195 7.5e-06 54.3 67 40.3
GSVIVG01036934001 Vitis vinifera HOM05D001222 ORTHO05D001195 7.5e-06 54.3 119 28.6


User provided reference genes

Program Settings