Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 5.8e-77 290.8 147 100.0
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 5.8e-77 290.8 147 100.0
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 5.8e-77 290.8 147 100.0
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 2.1e-71 272.3 150 92.0
BraA09t39118Z Brassica rapa HOM05D012212 ORTHO05D006213 2.8e-71 271.9 154 90.3
BcaB07g32663 Brassica carinata HOM05D012212 ORTHO05D006213 3.3e-64 248.4 153 88.2
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 1.7e-44 183.0 147 72.8
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 6.1e-42 174.5 154 68.2
AL1G44550 Arabidopsis lyrata HOM05D012212 ORTHO05D006213 2.9e-36 155.6 146 61.6
AT1G30515 Arabidopsis thaliana HOM05D012212 ORTHO05D006213 5.3e-30 134.8 149 55.7
CARHR029930 Cardamine hirsuta HOM05D012212 ORTHO05D006213 4.0e-25 118.6 149 50.3
Carub.0001s2874 Capsella rubella HOM05D012212 ORTHO05D006213 6.8e-25 117.9 147 49.0
Aa31LG6G11760 Aethionema arabicum HOM05D012212 ORTHO05D006213 1.9e-19 99.8 128 51.6
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 1.0e-12 77.4 122 43.4
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.7e-12 76.6 126 45.2
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 6.6e-12 74.7 134 44.0
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 8.6e-12 74.3 139 41.7
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.1e-11 73.9 121 46.3
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.1e-11 73.9 139 41.7
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 5.6e-11 71.6 121 48.8
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 9.5e-11 70.9 123 45.5
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 4.7e-10 68.6 123 44.7
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 1.4e-09 67.0 124 39.5
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 1.8e-09 66.6 156 35.9
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.8e-09 66.6 114 44.7
Carub.0007s1967 Capsella rubella HOM05D005932 ORTHO05D006213 1.2e-08 63.9 148 31.8
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 2.0e-08 63.2 110 44.5
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 4.4e-08 62.0 132 31.8
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 5.8e-08 61.6 122 37.7
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 7.5e-08 61.2 117 41.0
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 9.8e-08 60.8 121 34.7
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 1.3e-07 60.5 134 35.1
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 1.3e-07 60.5 144 33.3
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 1.3e-07 60.5 144 33.3
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 1.3e-07 60.5 144 33.3
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.3e-07 60.5 122 37.7
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 1.7e-07 60.1 125 40.0
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 1.7e-07 60.1 113 38.9
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.7e-07 60.1 140 41.4
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 2.9e-07 59.3 119 40.3
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 3.7e-07 58.9 146 32.9
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 4.9e-07 58.5 122 36.1
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 4.9e-07 58.5 123 35.0
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 6.4e-07 58.2 121 37.2
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 6.4e-07 58.2 129 38.8
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 8.3e-07 57.8 135 35.6
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 8.3e-07 57.8 99 40.4
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 8.3e-07 57.8 113 38.9
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 1.1e-06 57.4 125 36.8
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.4e-06 57.0 120 38.3
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 1.9e-06 56.6 112 38.4
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 2.4e-06 56.2 146 32.2
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 2.4e-06 56.2 146 33.6
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 2.4e-06 56.2 119 35.3
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 2.4e-06 56.2 132 33.3
Lalb_Chr18g0057981 Lupinus albus HOM05D005932 ORTHO05D006213 3.2e-06 55.8 119 33.6
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 4.1e-06 55.5 107 43.0
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 5.4e-06 55.1 110 36.4
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 5.4e-06 55.1 143 34.3
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 7.0e-06 54.7 128 35.9
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 7.0e-06 54.7 107 42.1
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 9.2e-06 54.3 119 39.5


User provided reference genes

Program Settings